Enhydra lutris kenyoni (northern sea otter): 111158671
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Entry
111158671 CDS
T05871
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
elk
Enhydra lutris kenyoni (northern sea otter)
Pathway
elk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111158671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elk03019
]
111158671
Enzymes [BR:
elk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111158671
Messenger RNA biogenesis [BR:
elk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111158671
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
111158671
NCBI-ProteinID:
XP_022376573
UniProt:
A0A2Y9KTU2
LinkDB
All DBs
Position
Unknown
AA seq
531 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSHPQQISLFDLPSEWYLKTRHS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWRVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGITGFQAFEVQLVLRQALPDIWTVPRDQGIIVKKVSKQHRWYLENTSCDRASCWKE
KILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHSLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTRNSGPVVIHASKCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLAWRVHSAGPMPEPSFPLYLDVLAPYVNQVNLIRAGVPKIN
FSGPDCPSIRPPILLLHVRKWPGVSEQQVYREFQNLCKFDVRRLSRSKFLLLTNKFKDAR
SILKEYRGHPTLQVSLYRYWRHSPNISCLLQVCGVVTTWALLALLLGRPGH
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgggcgccgacgagttcgagcagagtctccctctgctgcaggagctcgtcttg
ggcgctgacttcgtgggtctggacatagagttcacgggccttcgctctaacctgtcgcac
ccccagcagatcagtctctttgacttgccctcggagtggtatctaaaaacccgccacagt
gtccagcagttcacaatctgtcagattggattgtctgtgttttccagcattgaaggagag
tcaaacaagtatgtagcccattcgtgtaacttctttctcttcccgacgacatttgggatc
ttggattcagaattctctttccaggcttctagtgttcagtttttgaatcagtatggcttc
gactacaacaagtttctcaaaaacgggatcccgtatatgaatgaagagcaggagaagaaa
attaaacacaacattctgactggaaactggagagttcgcagttctctggataaagaccag
atcaaggtggtgatcgatgaggtgacgcggtggctggacttggcagaggagggcgactgg
atgactctccctggtataactggcttccaggcttttgaggtccagctggtgctgaggcag
gccctccccgacatctggacggtcccgagagaccaggggataatagtgaaaaaagtgagc
aaacagcatcggtggtatcttgagaacacctcctgtgatcgagcgagctgttggaaggag
aagattcttctctctgccaggggtttttcagtgtttttccagatgctagtgaaagcccaa
aagcccttagtgggccacaacatgatgatggacctgctgcatctccacgagaagttcttc
aggccgctcccagaaagctatgatcagtttaagctgaacatccacagcctgtttcctgtt
ctcattgacaccaagaatgtgaccaaggatatctggaaggaactgaatttcccaagggtt
tcaaatctttcagaagtttatgaggtcctaaacagcgacttgaatcctaccagaaattcc
gggccagtggtcattcacgcgagcaagtgtgaaaaatacgtggagaccaagtacccccac
gaggccgcgtatgatgccttcctctgtggatcagttcttctgaaagtggcccacttgctc
gcatggagagtacacagtgccggccccatgccagagccctccttccctctgtacctcgac
gtgctggctccctatgtgaaccaggtgaatctgatccgagccggggtccctaagattaat
ttctcaggtccagattgccccagtatccgacctcccatcctcctcctccatgtccggaag
tggccgggggtcagcgagcagcaggtctaccgtgagtttcagaatctctgcaagttcgat
gtgcggcgactctcgcggagcaagttcctgcttttgaccaataagtttaaggatgctcgg
agcatcctgaaggagtaccggggtcaccccaccctgcaggtgtccctgtaccggtactgg
aggcactccccgaacatcagctgcctgttgcaggtctgtggcgtggtcaccacctgggcc
ctcctggcgcttctcctcggaagacctggccactag
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