Enhydra lutris kenyoni (northern sea otter): 111161861
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Entry
111161861 CDS
T05871
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
elk
Enhydra lutris kenyoni (northern sea otter)
Pathway
elk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
elk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111161861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elk03019
]
111161861
03041 Spliceosome [BR:
elk03041
]
111161861
Messenger RNA biogenesis [BR:
elk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111161861
Spliceosome [BR:
elk03041
]
Complex B
Other components
Prp19-related factors
111161861
Complex C
111161861
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
111161861
NCBI-ProteinID:
XP_022381588
UniProt:
A0A2Y9L8E8
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARLSRSERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEDDDVDLELRLARFEQLIGRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKHAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtctttcccggtccgagcggccggacctcgttttcgaagaagag
gatctcccctatgaggaggagatcatgcggaaccagttctcggtcaagtgctggctccgc
tacattgagttcaaacaaggtgccccgaagccccggctcaaccagctgtatgagcgggcg
ctgaagctgctgccgtgcagctacaaactctggtaccgatacctgaaggcccgccgggcg
caggtgaagcaccgctgtgtcactgaccctgcctatgaagacgtcaacaactgccacgag
agggccttcgtgttcatgcacaagatgccccgtctgtggctggactactgccagttcctc
atggaccagggccgcgtcacgcacacgcgccgcacgtttgaccgtgcccttcgggccctg
cccatcacccagcactcccgaatctggcccctgtacctgcgcttcctgcgctcccacccg
ctgcccgagacggccgtgcggggctatcggcgcttcctcaagctcagccccgagagcgcg
gaggagtacatcgagtacctcaagtccagtgaccggctggacgaagccgcgcagcgcctg
gccaccgtggtcaacgacgagcgctttgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaacccggacaaggtgcagtcgctcaatgtg
gacgccatcatccgcgggggcctcacccgcttcacagaccagctgggcaagctctggtgc
tcactggctgactactacatccgcagtggccacttcgaaaaggcccgagatgtgtatgag
gaggccatccggacagtgatgaccgtgcgcgacttcacgcaggtgtttgacagctacgca
cagttcgaagagagcatgatcgcagccaagatggagaccgcctcggaactggggcgggag
gaggatgatgacgtggacctggagctgcggctggcccgcttcgagcagctcatcggccgc
cgtcccctgctgctcaacagcgtcttgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcatcagggccgcccccgggagatcatcaacacgtacacggag
gctgtgcagacggtggaccctttcaaggcgacgggcaagccccacaccctgtgggtcgca
tttgccaagttttatgaggacaacgggcagctggacgatgcccgcatcatcttggagaag
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgcgagtgtggc
gagctggagctccggcacgagaactatgaccaggccttgcggctgctgcggaaggccacc
gcgctgcccgcccgccgtgccgagtacttcgacggctcggagcctgtgcagaaccgtgtg
tacaagtcgctgaaggtgtggtcgatgctcgctgacctagaggagagcctgggcaccttc
cagtccaccaaggccgtgtatgaccgcatcctggacctgcgcattgccacgccccagatc
gtcatcaactatgccatgtttctggaggagcacaagtacttcgaggagagcttcaaggcg
tacgagcgtggcatctcgctgttcaagtggcccaacgtgtcagacatctggagcacctac
ctgaccaagttcatcgcccgctatgggggccgcaagctggagcgcgcgcgggacctcttc
gaacaggcgctggacggatgccctcccaaacatgccaagacgctctacctgctgtacgcg
cagctggaggaggagtggggcctggcccggcacgccatggccgtgtacgagcgtgccacc
agggccgtggagcccgcccagcagtacgacatgttcaacatctacatcaagcgcgcagcc
gagatctacggcgtcacccacacccgcggcatctaccagaaggccatcgaggtgctgtcg
gacgagcacgcccgggagatgtgcctgcgcttcgcggacatggagtgccggcttggcgag
atcgaccgggcgcgcgccatctacagcttctgctcccagatctgtgacccccggaccacc
ggggctttctggcagacgtggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgctgcggattcgccgcagcgtgcaggccacgtacaacactcaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagtgccacgggcactgtgtctgacctggcc
cccgggcagagcggcatggacgacatgaagctgctggaacagcgggcggagcagctggcg
gctgaggccgagcgggaccagcccccacgggcccagagcaagatcctgttcgtgaggagc
gacgcctcccgggaagagctggccgagctggcccagcaggccaaccctgaggagattgag
ctgggcgaggacgaggacgaggacgagatggacctggagcccaatgaggtgcggctggag
cagcagagtgtgccggccgccgtgttcgggagcctgaaggaggactga
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