Eubacterium callanderi: ELI_0659
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Entry
ELI_0659 CDS
T01336
Name
(GenBank) DNA-directed RNA polymerase specialized sigma subunit
KO
K03092
RNA polymerase sigma-54 factor
Organism
elm
Eubacterium callanderi
Pathway
elm02020
Two-component system
elm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
elm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ELI_0659
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ELI_0659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elm03021
]
ELI_0659
Transcription machinery [BR:
elm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ELI_0659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_Crp_2
MarR
HTH_23
HTH_IclR
Etd1
Motif
Other DBs
NCBI-ProteinID:
ADO35673
UniProt:
E3GJ38
LinkDB
All DBs
Position
634737..636149
Genome browser
AA seq
470 aa
AA seq
DB search
MNIKVDLNLKQTQKLVMTTEMKQAIEILQLTSMELNNLIDKELLENPMLEFNDSPMESME
VVKDDAAKKEESKDQIEWDDYFQNMQSTEFRNTPSSTYDPDDEFNFEKFSYYETTLNEYL
LLQFHVLSEDLTETENLIGEYLIDCIDDNGYLLIDMDYICDILGVTQDVVEKLIGIIQQF
DPAGVGARDIKECLLIQLRQEGYDDEEYENLVNNYLTDLAENQFKRVSQETGISTSELAE
FKELIKTLEPKPGRQFTNFDGVKYIIPDGSIEWIDNELVVQINDISAPRLQINSFYQGML
KTRNENEDTKKYIEKKLDSAAFLIKSIEQRRDTIRKVIEAIAHYQENFFREGVEDLKPLT
LKAIADMIEVHESTVSRAIRGKYVQTPKGTFSLKFFFKRGFSQGADDVSSEAIKQKIQSF
VDAEDKRKPLSDQKIVEMLKEQGVDVARRTIAKYREALNILPSSKRKQFR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaatattaaggttgatttaaatttaaaacagacacaaaaattagtgatgacaaccgaa
atgaagcaggcgatcgagatattgcagctgacttctatggagctaaacaaccttattgat
aaggagcttctggaaaaccccatgctggaatttaacgacagtccgatggaatccatggag
gttgtcaaagacgatgcagctaaaaaagaggaaagcaaggatcagattgagtgggacgac
tatttccagaatatgcagtccacagaattcagaaatacgccgtcatccacctatgatccc
gacgatgagtttaattttgagaagttttcctattatgaaaccacactcaacgagtatctg
ctgctccagtttcacgtgctttctgaagatttaacagaaacagaaaacctgatcggggaa
tacctgatcgactgcattgacgacaacggctatctgctcattgatatggactatatctgc
gatatcctgggcgtaacgcaggatgttgtcgaaaagctcatcggaatcatacaacaattt
gatcccgccggggtcggtgcaagggacatcaaggaatgtctgctgatccagctgcgtcag
gagggctacgacgatgaggaatatgaaaatcttgtcaacaattatctgaccgatctggcc
gaaaaccagttcaagcgggtcagccaggaaacaggcatttccacctcggaactggcggag
ttcaaagagctgataaaaaccctggaacccaagccaggacgccagttcaccaattttgac
ggtgtgaagtacattattccggacggcagcattgagtggattgacaatgagctggtggtc
cagatcaatgatatttcagccccgcggcttcagatcaactccttttatcagggaatgctg
aagacacggaatgaaaatgaagataccaaaaaatatattgagaaaaagctggattcagca
gcctttctcattaaaagcatcgagcagcgccgggatacgattcgcaaggtcatcgaggcc
attgcccactaccaggaaaatttcttcagggaaggggtagaggatcttaagccgctgacg
ctcaaggccattgcagacatgatcgaagtgcacgaatccacggtcagccgtgccatccgt
ggaaaatatgtccagacaccaaaggggaccttctcgttgaagttcttttttaaacgggga
ttctcccagggagcggacgatgtatcatcagaggccatcaagcagaaaatacagtccttt
gtggacgctgaggataagcgtaagccgctgagcgaccagaaaatcgttgaaatgctcaag
gagcagggggttgatgtggcccgcaggaccatcgccaaataccgggaagcactcaatata
cttccatcttcgaagcgcaagcagtttcgataa
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