Eubacterium callanderi: ELI_3796
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Entry
ELI_3796 CDS
T01336
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
elm
Eubacterium callanderi
Pathway
elm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
elm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ELI_3796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elm03400
]
ELI_3796
Enzymes [BR:
elm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ELI_3796
DNA repair and recombination proteins [BR:
elm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ELI_3796
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADO38747
UniProt:
E3GGE2
LinkDB
All DBs
Position
complement(3538094..3541516)
Genome browser
AA seq
1140 aa
AA seq
DB search
MDRLFNDLKGTPKIEKIFEAIEESIGVNLSNVKTGLKGFLTLLTYEHFDTNVLFITHSDR
DAQKKAEILRKFRDTGVLYYPLEPVHDYFSDAHSQDIAHQRMTVIEKLFSEKKHIIVASI
DSILKKMVPKEAMEALFFSINNGDTFDLEALVVKLVNLGYERVYQVESKGQFALRGGILD
IYNVTSEDAVRIEFFDDEVDSMRLFDVDSQLSYDQIENVRIAPAKEIVLSEEERQRIFKM
IHKKYDGNELYMELVEKLEQEGAQYDETLFTFIKENDSFMDYVGKNIVIWDEYTRIKETY
DIFIKKTWLDYESLITQGYILPEEKNKFFTFHHIEKSLEGCPAIKEYLFNSRAKKGMNLD
MNSRDLESFAGQFPLFLDFLNRRLTLGYRIHICCKTDKTRETVKQYLVDQEVFNFIENEG
PGVQLSVGEISEGFEMEDEKVVYINESEIFKEKRTSQRKKKHKGRKIDSFAELHVGDYVV
HDVHGIGIYLGIEQLTIDNVTKDLMVIEYAGDARLYIPVEQMDSVQVYIGTGGDKKPKVN
QMGNPDWQKAKNKAQKAVEDMADELIALYAKRRSMKGYAFSPDTSWQKEFEDDFPYIETE
DQLRCVEEIKADMESEIPMDRLLCGDVGYGKTEVALRAAFKAVMEGKQVAMLVPTTILAQ
QHYNTVLERFRKYPISVEVISRFRTSGQQKKILGDLALGKLDMIIGTHRLLSQDVQFKDL
GLLIIDEEQRFGVRSKEKIKQLKQNVDVLTLSATPIPRTLHMSMTGVRDMSVIEEPPEGR
RPVQTYVMAYNPLIIQDAINRELGRGGQVYYVHNRVHDIHEVAIDVQSLVPDARIVVAHG
RMSGSELEDIMVDFLNHDFDILVTTTIVESGLDVKNANTMIIDEGDHFGLSQLYQLRGRV
GRSDAQAYAYVTHKKEILTEVAQKRLKAIKDFTAFGSGFKVAMRDLEIRGAGNILGAEQS
GHLFKIGYELYCRILEEAISKRMDGVEVETEEPIRINLDIDGYIPERYISSEELKYDIYK
KLTFIKTIEDYDDFEEELLDRFGDIPNGVYNLMSIAMIKNMASSIGIKEIKQKGQFIYLT
FSEKKEVFVPDAEKMPELIRKYKVKFKAGKANEACWSFNLSSVKDKDILKEIISFFEDLK
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggatcgactgtttaatgacttaaaaggaacgcctaaaatcgaaaaaatatttgaagcc
attgaagaatccataggggttaatctctcaaatgtcaagactggcctaaaaggtttttta
acacttttgacctatgaacattttgatacgaatgttttgtttatcacccattccgacaga
gatgctcaaaaaaaggctgaaattttgagaaagttcagagataccggggtgctgtattat
ccattggagccggttcatgattatttttcggatgcccatagtcaggatattgcccatcag
cgtatgaccgtgatcgaaaaactgttttcagaaaaaaaacatatcattgtagcatcaatc
gacagtattttgaaaaaaatggtacccaaagaagcgatggaagcgctgtttttctcaatt
aataacggtgatacctttgatctggaagcattggtcgtaaagcttgtgaatttggggtat
gagagagtttatcaggtagagtcgaaggggcagtttgcactgcgtggcggaattttagat
atctataacgtaacctccgaagatgctgtccgtattgagttttttgatgatgaagtggac
tcaatgcgtctttttgatgttgacagccagctttcatatgatcagatagaaaatgttcgg
atagcccctgcaaaagaaatcgttttgtctgaggaagaacggcagagaatttttaagatg
atccataaaaaatatgatggaaacgagctttatatggagcttgttgaaaagctggagcag
gaaggcgctcaatatgacgaaaccctgtttacctttattaaggaaaacgactcctttatg
gattatgtggggaaaaatattgttatttgggatgaatatacgcggatcaaggaaacctat
gatatttttatcaaaaaaacatggctggattatgagtcgcttataacacaaggatacatt
ctgcctgaggaaaaaaacaagttttttacattccaccatattgaaaaaagcctggaaggc
tgtccggcaattaaagaatatctttttaacagcagagcaaaaaaaggaatgaatctggat
atgaattcccgagatcttgaaagctttgcgggccagtttccattatttttagatttttta
aaccggcggcttaccttaggataccggatccatatctgttgtaaaactgataagacccgt
gaaacggtcaagcaatacctggtagaccaggaggtctttaattttattgagaatgaaggg
ccaggtgtgcagctttcagttggcgaaatttccgaaggctttgaaatggaagatgaaaaa
gttgtctacattaatgagtctgagatatttaaagaaaagcgcacctcgcagagaaagaaa
aaacacaaaggaagaaagattgattcctttgccgagttacacgtaggggattatgttgtc
catgatgtgcatggtattgggatatacctgggaattgagcagctgacaattgacaatgta
accaaagacctgatggtaatcgagtatgccggagatgccaggctttatattccagtagag
cagatggattccgtccaggtttatataggtacgggcggcgataaaaagccaaaggttaac
cagatgggaaatcccgattggcagaaggctaaaaataaagcccaaaaagcagtcgaggat
atggccgatgagctcatcgctttgtatgccaaaagacgttcgatgaagggatatgccttt
agtccggatacttcctggcaaaaagagtttgaggatgatttcccttatattgaaacagaa
gatcagctgcgctgtgttgaagagatcaaggcggatatggaatcggaaataccaatggat
cgccttttatgtggtgatgttggatatggaaagactgaggtagccttgcgggctgctttc
aaagctgtcatggaaggaaaacaggtggcaatgctggttccgacaacgattttggcacag
cagcactacaataccgttttagagaggtttcggaaatatcctatcagtgtagaggtgatc
agccgtttcagaacctctggacagcaaaagaaaattttgggggatttggcgcttggcaag
ctggacatgattatcggcacacaccgcctgttatcccaggatgttcaatttaaagacctt
gggctgcttattattgatgaggagcagcgctttggggtacggtctaaagaaaaaataaaa
cagttaaagcagaatgtcgatgttttaaccttaagcgcaaccccgatcccgcgtacactg
catatgtcgatgacgggtgtgcgtgatatgagtgtcattgaagagcctccagaaggaagg
aggccggttcaaacttacgttatggcttataacccgctgattatccaggacgccatcaac
cgcgagcttggccgtggaggacaggtttattatgttcataaccgtgttcacgatatccat
gaggttgctattgatgtacagagtcttgtgccagacgcgagaattgttgtggcccatgga
cggatgagtggcagtgagctggaggatattatggttgattttttgaatcatgattttgat
attttggtgacaacgaccattgttgagtctggattggatgttaaaaacgccaataccatg
atcatagacgagggggatcatttcggcctttcacagctttaccagctgagagggcgtgtc
ggaagatcggatgctcaggcttatgcttatgttacccacaaaaaagaaattttgaccgaa
gttgcacaaaagcgtttaaaagccattaaggattttacagcctttggatcgggatttaag
gtagccatgcgagatcttgaaatacgcggagccggcaatattctgggagcagagcagtcg
gggcacttatttaaaattggttatgagctgtattgtcgtattttggaagaagctatcagt
aaacgtatggacggtgtagaagtagaaactgaagagccaattcgtatcaatctggacata
gacggctatattcccgaacgctatatcagcagcgaagagctgaaatatgacatctataaa
aaacttacatttattaaaacgattgaggattatgatgattttgaagaagagctcctcgac
cgttttggggatataccaaatggtgtttataatctaatgtctattgctatgattaaaaac
atggcttcatccatcgggatcaaagagattaaacaaaaggggcagtttatttatctcacc
tttagtgaaaaaaaggaagtttttgtcccggatgctgaaaaaatgccggaattaatacgt
aaatataaagtaaaatttaaagcgggaaaagccaatgaagcgtgctggagttttaacttg
tcatcagtcaaggataaagatattttaaaagaaattatttcattttttgaggatttgaaa
taa
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