Escherichia coli O83 H1 NRG 857C (AIEC): NRG857_05375
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Entry
NRG857_05375 CDS
T02068
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eln
Escherichia coli O83:H1 NRG 857C (AIEC)
Pathway
eln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NRG857_05375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eln03400
]
NRG857_05375
Enzymes [BR:
eln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NRG857_05375
DNA repair and recombination proteins [BR:
eln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NRG857_05375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADR26503
UniProt:
A0A0H3EIB6
LinkDB
All DBs
Position
complement(1145053..1148499)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS
QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRVFDVDSQRTLEEVEEINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTL
ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD
LAIQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD
RGRYLMIGAAEHGFVDTMRNLALICESDLLGERVARRRQDSRRAINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF
KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVDLRMPSLLPDDFIPDV
NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR
ELEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggc
gagttaaccggcgctgcctgcgcgacgctggtagcggaaattgccgaacgtcacgccggt
ccggtggtactcattgcaccagatatgcaaaatgctctgcgtttgcatgatgaaatcagc
cagttcaccgatcagatggtgatgaatctggcggactgggaaaccctcccttacgacagt
ttttcgcctcatcaggacattatctcctcgcgtctttccaccctttaccagctaccgacc
atgcagcgtggcgtactgattgttccggtgaatacgcttatgcagcgcgtttgcccgcac
agctttctccacggtcatgcgctggtgatgaaaaaaggtcagcgcctgtcacgagatgca
ttacgaacccaactggacagcgccggttatcgccatgttgaccaggtgatggagcacggc
gaatacgccacgcgcggcgcgttgctggatctcttcccgatggggagtgagctgccttat
cgtcttgatttctttgatgatgaaatcgacagcctgcgggtgtttgacgtcgatagccag
cgcacgctggaggaagtagaagagatcaatctgcttcccgcgcacgaatttcctaccgat
aaagcggcaattgaactgttccgcagccagtggcgtgataccttcgaagtgaagcgcgac
ccggaacatatttatcagcaagtgagtaaaggcacattacctgccgggatcgagtactgg
cagccgctattcttcagcgaaccgctgccgccactgttcagttatttccctgccaatacg
ctgttggtgaatactggcgatctggaaaacagtgccgaacgtttccaggctgacacgctg
gcgcgttttgagaatcgcggcgtcgacccaatgcgcccactgttgccaccacaatcgctc
tggctgcgggtggatgagctcttctcagagctgaaaaactggccccgtgtgcagctaaaa
actgaacatttaccgacaaaagcagcgaatgccaatttaggtttccagaaactgccagac
ctggccattcaggcacaacaaaaagcgccgctggatgcgctgcgtaagttcctcgagtct
ttcgacggtccggtggtgttctcggtagaaagtgaaggccgccgtgaagcgttgggtgaa
ctgctcgcgcgaattaaaattgctccgcaacgcattatgcgtcttgatgaagccagcgac
cgtgggcgttatctgatgattggcgctgccgaacatggttttgtcgatacgatgcgtaac
ctggcgctgatttgcgaaagcgatctgctcggtgaacgcgttgcccgtcgtcgtcaggat
tctcgccgcgccatcaaccccgatacactgatccgtaaccttgcggagctgcatattggt
cagccggtggtccatctggagcacggcgtcggtcgttatgccggaatgaccacgctcgaa
gctggaggcattactggcgagtatttgatgctcacctatgccaacgacgccaaactgtat
gttccggtgtcgtcactgcatctgattagccgttacgcgggtggcgcagaagaaaacgca
ccactgcataaacttggtggcgatgcctggtcacgcgcacggcagaaagcggcggaaaaa
gtgcgtgatgtggcggcggaattgctggatatctacgcgcaacgcgccgccaaagagggc
ttcgcgtttaaacacgatcgcgagcagtatcagttattctgcgacagcttcccgtttgaa
accacgccggatcaggcgcaggccattaatgcggtgcttagcgacatgtgtcagccgctg
gcaatggatcgtctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatgcgc
gccgctttcctggcggtagataaccacaaacaggtggcggtgctggtgcctaccaccctt
ctcgcgcagcagcattacgacaacttccgcgaccgtttcgccaactggccggtacgtatc
gaaatgatctcccgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcg
gaagggaaaatcgatattctgatcggtacgcacaaactgctgcaaagtgacgtcaagttt
aaagatttaggcctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaagag
cgcattaaagcgatgcgcgcgaacgtggatattctgacgcttaccgcaacgccgatccca
cgtacgctgaatatggcaatgagcggaatgcgcgatctgtcgattatcgccacgccgccc
gcccgtcgtctggcagttaaaacctttgtccgtgagtatgacagtctggtggtccgggag
gcgatcctgcgtgaaattttgcgcggaggacaggtttattatctctacaatgatgtggaa
aacatccagaaagccgccgaacggctggcagaactggtacctgaagcgcggattgccatc
ggtcacgggcaaatgcgtgagcgcgaactggaacgggtgatgaatgatttccatcatcaa
cgtttcaacgtgctggtttgtaccaccattatcgaaaccgggatcgacattcctaccgcc
aacaccattatcattgaacgcgcggatcacttcggtctggcacagttgcaccagttgcgc
ggtcgcgtcgggcgttctcaccaccaggcatatgcatggctactgacgccgcatccaaaa
gcgatgactaccgatgcgcaaaaacgtcttgaagcgattgcctcgctggaagatctcggt
gcaggttttgcgctggcaacgcacgatctggagatccgcggcgcaggtgaactgcttggc
gaagaacaaagcggctcaatggaaaccatcggtttctcgctgtatatggagttgctggaa
aacgccgtcgatgcgctgaaagccggacgcgagccgtcgctggaagatctcaccagccag
caaacagaagtcgacctgcggatgccgtcgctattgccagatgatttcatccctgacgtg
aacacgcgtctgtcgttctacaaacgtattgccagcgccaaaacggaaaacgaactggaa
gagatcaaagtcgagcttatcgatcgcttcggcctgctgccggatccggcgcgtaccctg
ctggatattgcccgtctgcgccagcaagcgcagaaactggggatcaggaagctggaaggt
aatgagaaaggcggcgtgatcgaatttgccgagaagaatcacgttaatccggcctggttg
attggtttgctgcaaaaacagccgcagcattaccgccttgatggtccgacgcgtctgaag
tttattcaggatttgagcgagcggaaaacgcgtatcgaatgggtacgccagtttatgcgt
gaactggaagagaacgcgatcgcttaa
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