Escherichia coli O83 H1 NRG 857C (AIEC): NRG857_15690
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Entry
NRG857_15690 CDS
T02068
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eln
Escherichia coli O83:H1 NRG 857C (AIEC)
Pathway
eln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NRG857_15690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eln03019
]
NRG857_15690
03009 Ribosome biogenesis [BR:
eln03009
]
NRG857_15690
Enzymes [BR:
eln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NRG857_15690
Messenger RNA biogenesis [BR:
eln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NRG857_15690
Ribosome biogenesis [BR:
eln03009
]
Prokaryotic type
rRNA helicases
NRG857_15690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ADR28548
UniProt:
A0A0H3EPY3
LinkDB
All DBs
Position
complement(3324021..3325910)
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AA seq
629 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLGKIQPTAEGEELD
LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD
GRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtattccacatctg
ctgaatggccgcgacgtcctgggtatggcccagacggggagcggaaaaactgcagcattc
tctttacctctgctgcagaatcttgatcctgagctgaaagcaccacagattctggtgctg
gcaccgacccgcgaactggcggtacaggttgctgaagcaatgacggatttctctaaacac
atgcgcggcgtaaacgtggttgccctgtacggcggccaacgttatgacgtgcaattacgc
gccctgcgtcaggggccgcagatcgttgtcggtactccgggccgtctgctggaccacctg
aaacgtggcactctggacctctctaaactgagcggtctggttctggatgaagctgacgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggt
catcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatc
agccagagctactggactgtctggggtatgcgtaaaaacgaagcactggtacgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaa
gtggcagaagcccttgagcgtaacggctacaacagcgccgcgctgaacggtgacatgaac
caggcgctgcgtgagcagacactggaacgactgaaagatggtcgtctggacatcctgatt
gcgaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtggttaactac
gatatcccgatggattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggc
cgtgctggccgtgcgctgctgttcgttgagaaccgtgagcgtcgtctgctgcgtaacatt
gaacgcaccatgaagctgaccattccggaagtagaactgccgaacgcagaactgctgggc
aaacgtcgtctggaaaaatttgccgctaaagtacagcagcagctggaaagcagcgatctg
gatcaataccgtgcactgctgggcaaaattcagccgactgccgaaggtgaagagctggat
ctcgaaactctggcagccgcactactgaaaatggcacagggtgaacgtactctgattgtt
ccgccagatgcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgtggtccg
cgcgatcgtaacgaccgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgcgaacgt
cgtgatgttggcgatatgcagttgtaccgtattgaagtgggccgcgatgatggtgttgaa
gttcgtcatatcgttggtgcgattgctaacgaaggcgacatcagcagccgttacatcggt
aacatcaagctgtttgcttctcactccaccatcgaactgccgaaaggtatgccgggtgaa
gtgctgcaacactttacgcgtactcgcattctcaacaagccgatgaacatgcagttactg
ggcgatgcacagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttcggtggc
gaacgtcgtgaaggcggtcgtaacttcagcggtgaacgccgtgaagggggtcgtggtgat
gggcgtcgttttagcggcgaacgtcgtgaaggccgcgcaccgcgtcgtgatgactctacc
ggtcgtcgtcgtttcggtggtgatgcgtaa
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