Escherichia coli O44 H18 042 (EAEC): EC042_1169
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Entry
EC042_1169 CDS
T02067
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
elo
Escherichia coli O44:H18 042 (EAEC)
Pathway
elo03030
DNA replication
elo03430
Mismatch repair
elo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
elo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EC042_1169 (holB)
03430 Mismatch repair
EC042_1169 (holB)
03440 Homologous recombination
EC042_1169 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elo03032
]
EC042_1169 (holB)
03400 DNA repair and recombination proteins [BR:
elo03400
]
EC042_1169 (holB)
Enzymes [BR:
elo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EC042_1169 (holB)
DNA replication proteins [BR:
elo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EC042_1169 (holB)
DNA repair and recombination proteins [BR:
elo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EC042_1169 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
HolB_lid
DUF8054_M
EPF
Motif
Other DBs
NCBI-ProteinID:
CBG33987
UniProt:
D3H1R5
LinkDB
All DBs
Position
1248184..1249188
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AA seq
334 aa
AA seq
DB search
MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGEDALIYALSRYLLCQQPQGHKSCG
HCRGCQLMQAGTHPDYYTLAPEKGKNALGIDAVREVTEKLNEHARLGGAKVVWVTDAALL
TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV
TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVQSGDWYSLLAALNHEQ
APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVVELANHLSPSRLQAILGDVCHIREQL
MSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagatggtatccatggttacgacctgatttcgaaaaactggtagccagctatcaggcc
ggaagaggtcaccatgcgctactcattcaggcgttaccgggtatgggcgaggatgcttta
atctacgccctgagccgttatttactctgccaacaaccgcagggccacaaaagttgcggt
cactgtcgtggatgtcagttgatgcaggctggcacgcatcccgattattacaccctggct
cccgaaaaagggaaaaatgcactgggcattgatgcggtacgtgaagtcaccgaaaagtta
aatgagcacgcacgcttaggtggtgcgaaagttgtctgggtaaccgatgctgccttactg
accgacgccgcggctaacgcattgctgaaaacgcttgaagagccaccagcagaaacctgg
tttttccttgctacccgcgagcctgaacgtttactggcaacattacgtagtcgttgtcgg
ttacattaccttgcgccgccgccggaacagtacgccgtgacctggctttcacgcgaagtg
acaatgtcacaggatgcattacttgccgcattgcgcttaagcgccggttcgcctggtgcg
gcactggcgctgtttcagggagataactggcaggctcgtgaaacattgtgccaggcgctg
gcatatagcgtgcaatcgggcgactggtattcgctgctagcggcccttaatcatgaacaa
gctccggcgcgtttacactggctggcaacgttgctgatggatgcgctaaaacgccatcat
ggcgctgcgcaggttaccaatgttgatgtgccgggcctggtcgtcgaactggcaaatcat
ctttctccctcgcgcctgcaggctatactgggggatgtttgccacattcgtgaacagtta
atgtctgtcacaggcatcaaccgcgagcttctcatcaccgatcttttactgcgtattgag
cattacctgcaaccgggcgttgtgctaccggttcctcatctttaa
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