Escherichia coli O44 H18 042 (EAEC): EC042_1541
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Entry
EC042_1541 CDS
T02067
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
elo
Escherichia coli O44:H18 042 (EAEC)
Brite
KEGG Orthology (KO) [BR:
elo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elo03019
]
EC042_1541 (hrpA)
Enzymes [BR:
elo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EC042_1541 (hrpA)
Messenger RNA biogenesis [BR:
elo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EC042_1541 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
CBG34365
UniProt:
D3H4K4
LinkDB
All DBs
Position
1606325..1610227
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRQRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDHAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKTRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttacggccttgcagcagcggctggattcgctgatg
ctgcgcgacagacagcgtttttctcgccgtctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccatgcggcagggaaa
gtcctgctgcgtgaagcggcacgaccggaaatcacttatccggacaatttgccggttagt
cagaaaaagcaggacattctcgaagcaattcgtgatcaccaggtagtgatcgtcgccggg
gaaacgggttccggtaaaacgactcagctaccgaaaatctgtatggagctgggccgcggg
attaaagggctgatcggccatacccagccgcgtcgtctggcggcgcgaacggtggcgaac
cgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgtttc
agcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcg
gagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcgcac
gaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcggcgt
cctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgctat
cgcccgattgttgaagaagccgatgataccgagcgcgatcagttgcaggcgatttttgac
gctgtagacgaactgagccaggaaagccctggcgacattctgatctttatgagtggtgag
cgggaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaaatc
ttgccgctttatgcgcggctttcgaacagcgaacagaaccgcgtgttccagtcgcacagt
ggacggcgcattgtgctggcgaccaacgtcgcggaaacctcgctgaccgtaccggggatt
aaatacgttatcgacccaggtacggcgcgtatcagccgctacagctatcgcactaaagtg
cagcgtttgccgattgagccgatttctcaggcgtctgccaaccagcgtaaaggccgctgt
ggtcgtgtgtcagaagggatctgtattcgtctctattcggaagatgatttcctgtcgcgc
ccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttacagatg
accgcgttggggctgggtgatatcgccgcgttcccatttgtcgaagcgccggataaacgt
aatatccaggatggcgtgcgtctgctcgaagagctgggcgcgatcaccactgatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctttcgcaattgcctgtcgatcct
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatgatt
atcacgtccgcgctctccatccaggatccgcgcgaacgaccgatggacaaacagcaggca
tcggacgaaaaacatcgtcgcttccacgacaaagaatccgacttcctcgcgtttgtaaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgcctg
tgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacccag
ttgcgccaggtagtaaaagaacttggcattccagttaacagcgaaccggcggagtatcgc
gaaattcacatcgccttactgaccggtttgctttcccatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttttccatctttcccggttctggttta
ttcaaaaagccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
gggcgcattgcggcacgcatcgatccagaatgggtggagccagttgctcagcatttaatt
aaacgcacctacagcgaaccacactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcaccgtttacgggttgccgattgttgccgcgcgtaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactggcag
acacgtcatgcattcttccgtgaaaacctgaaactgcgggctgaagtggaagaactggaa
cacaaaacacgtcgccgcgatattctggtggatgacgaaacgctgtttgagttttatgac
cagcgcatcagccacgatgtgatctctgcacgtcacttcgacagctggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaagatcagcaagctggattacccgaacttctggcatcagggcaatctcaaactgcgt
ttgagctatcagtttgagccgggggcagatgctgacggtgtgactgtgcatatcccgctg
ccgttacttaaccaggttgaggagagcgggtttgagtggcagatccccggtctgcgccgc
gaactggtgattgctctgattaaatcgttgccgaaaccagtacgccgtaattttgtgccc
gcgccaaactacgccgaagcttttttaggccgcgtcacaccgctggaattgccgttgctc
gacagccttgaacgagagctgcggcggatgactggcgtcaccgttgaccgcgaagactgg
cactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctcattacaggatctgaaagatgctctgaaaggcaaagtg
caggaaacgctgtctgcggtggcggatgacggtatcgagcagagcggcttacatatctgg
agttttgggcaactgccggaaagctacgaacagaagcgtggcaactacaaagtgaaggcg
tggccagcgttggtggatgagcgcgacagcgtggcgatcaaactgtttgataacccgctg
gaacaaaagcaggcaatgtggaacggtcttcgccgtttactgctgctgaatattccgtcg
ccaatcaaatatttgcatgagaagttgccaaacaaagccaaacttgggctgtactttaac
ccgtatggcaaagtgctggagctgatagacgactgtatctcctgcggtgtggatcaactg
atcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaaaaa
gtccgcgctgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatcctt
acggcagtgttcaatatcaacaaacgcctgaaagggcgggtggatatgaccatggcgctg
gggctttctgacattaaagcgcagatgggcgggctggtgtatcgcggttttgtcactggc
aacggttttaaacggctgggcgacacgctgcgttatttgcaggcgattgaaaaacgactg
gaaaaactggcggttgatccgcatcgcgaccgtgctcagatgctgaaagtcgaaaatgtc
cagcaggcgtggcagcagtggatcaacaaactgccgcctgcacgtcgtgaggatgaagac
gtgaaagagatccgttggatgatagaagagttgcgcgtcagctacttcgctcaacaactt
ggtacgccttatccgatttcggataagcgtattttgcaggcgatggagcagattagcggt
taa
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