Escherichia coli O44 H18 042 (EAEC): EC042_3361
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Entry
EC042_3361 CDS
T02067
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
elo
Escherichia coli O44:H18 042 (EAEC)
Pathway
elo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
elo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EC042_3361 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elo03021
]
EC042_3361 (rpoD)
Transcription machinery [BR:
elo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EC042_3361 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
CBG36189
UniProt:
D3GWN6
LinkDB
All DBs
Position
3584121..3585962
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AA seq
613 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH
VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR
SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK
NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
atcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgatgctggctgaaaacaccgcggacgaagatgctgccgaagccgcc
gcgcaggtgctttccagcgtggaatctgaaatcgggcgcacgactgacccggtacgcatg
tacatgcgtgaaatgggcaccgttgaactgttgacccgcgaaggcgaaattgacatcgct
aagcgtattgaagacgggatcaaccaggttcaatgctccgttgctgaatatccggaagcg
atcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgat
ctgatcaccggctttgttgacccgaacgcagaagaagatctggcacctaccgccactcac
gtcggttctgagctttcccaggaagatctggacgatgacgaagatgaagacgaagaagat
ggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgtgaaaaa
tttgcggaactgcgcgctcagtacgttgtaacgcgtgacaccatcaaagcgaaaggtcgc
agtcacgctgccgctcaggaagagatcctgaaactgtctgaagtattcaaacagttccgc
ctggtgccgaagcagtttgactacctggtcaacagcatgcgcgtcatgatggaccgcgtt
cgtacgcaagaacgtctgatcatgaagctctgcgttgagcagtgcaaaatgccgaagaaa
aacttcattaccctgtttaccggcaacgaaaccagcgatacctggttcaacgcggcaatt
gcaatgaacaagccgtggtcggaaaaactgcacgatgtctctgaagaagtgcatcgcgcc
ctgcagaaactgcagcagattgaagaagaaaccggcctgaccatcgagcaggttaaagat
atcaaccgtcgtatgtccatcggtgaagcaaaagcccgccgtgcgaagaaagagatggtt
gaagcgaacttacgtctggttatttctatcgcgaagaaatacaccaaccgtggcttgcag
ttccttgacctgattcaggaaggtaacatcggcctgatgaaagcggtagataagttcgaa
tatcgccgtggttacaagttctccacctacgcaacctggtggatccgtcaggcgatcacc
cgctctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagactatc
aacaagctcaaccgtatttctcgccagatgctgcaagagatgggccgcgagccgacgccg
gaagaactggctgaacgtatgctgatgccggaagataagatccgcaaagtgctgaagatc
gccaaagagccaatctccatggaaacgccgatcggtgatgatgaagattcgcatctgggg
gatttcatcgaggataccaccctcgagctgccgctggattctgcgaccaccgaaagcctg
cgtgcggcaacgcacgacgtgctggctggcctgaccgcgcgtgaagcaaaagttctgcgt
atgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaacagttc
gacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgcaaactgcgtcac
ccgagccgttctgaagtgctgcgtagcttcctggacgattaa
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