Escherichia coli O44 H18 042 (EAEC): EC042_3453
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Entry
EC042_3453 CDS
T02067
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase (DEAD-box protein)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
elo
Escherichia coli O44:H18 042 (EAEC)
Pathway
elo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EC042_3453 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elo03019
]
EC042_3453 (deaD)
03009 Ribosome biogenesis [BR:
elo03009
]
EC042_3453 (deaD)
Enzymes [BR:
elo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EC042_3453 (deaD)
Messenger RNA biogenesis [BR:
elo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EC042_3453 (deaD)
Ribosome biogenesis [BR:
elo03009
]
Prokaryotic type
rRNA helicases
EC042_3453 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
CBG36280
UniProt:
D3GXQ3
LinkDB
All DBs
Position
complement(3674799..3676766)
Genome browser
AA seq
655 aa
AA seq
DB search
MLINFMMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIP
HLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFS
KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA
DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD
MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR
AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESS
DLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDR
GPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRY
IGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGF
GGERREGGREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
ttgctgatcaatttcatgatgagttatgtagactggccgccattaattttgaggcacacg
tactacatggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatcctt
gaagcccttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtattcca
catctgctgaatggccgcgacgtcctgggtatggcccaaacggggagcggaaaaactgca
gcattctctttacctctgctgcagaatcttgatcctgagctgaaagcaccacagattctg
gtgttggcaccgacccgcgaactggcggtacaggttgctgaggcaatgacggatttctct
aaacacatgcgcggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcaa
ttacgcgccctgcgtcaggggccgcagatcgttgtcggtactccgggccgtctgctggat
cacctgaaacgtggcactctggacctttctaaactgagcggtctggttctggatgaagct
gacgaaatgctgcgcatgggcttcatcgaagacgttgaaactattatggcgcagatcccg
gaaggtcatcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgtattacc
cgccgctttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcct
gacatcagccagagctactggactgtctggggtatgcgtaaaaacgaagcactggtacgt
ttcctggaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgact
ctggaagtggcagaagctcttgagcgtaacggctacaatagcgccgcgctgaacggtgac
atgaaccaggcgctgcgtgagcagacactggaacgactgaaagatggtcgtctggacatc
ctgattgcgaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtagtt
aactacgatatcccgatggattctgagtcttacgttcaccgtatcggtcgtaccggtcgt
gcgggtcgtgctggtcgtgcgctcctgttcgttgagaatcgtgagcgtcgtctgctgcgt
aacattgaacgcaccatgaagctgaccattccggaagttgaactgccgaacgcagaactg
ctgggcaaacgtcgtctggaaaaattcgccgctaaagtacagcagcagctggaaagcagc
gatctggatcaataccgtgcactgctgagcaaaattcagccgactgccgaaggcgaagag
ctggatctcgaaactctggccgccgcactgctgaaaatggcacagggtgaacgtactctg
attgttccgccagatgcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgt
ggtccgcgcgatcgtaacgaccgtggcccgcgtggtgaccgtgaagatcgtccgcgtcgt
gaacgtcgtgatgttggcgatatgcagctgtaccgcattgaagtgggccgcgatgatggt
gttgaagttcgtcatatcgttggcgcgattgctaacgaaggcgacatcagcagccgttac
atcggtaacatcaagctgtttgcttctcactccaccatcgaactgccgaaaggtatgccg
ggtgaagtgctgcaacactttacgcgtactcgcattctcaacaagccgatgaacatgcag
ttactgggcgatgcacagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttc
ggtggcgaacgtcgtgaaggtggtcgtgaaggcggtcgtaacttcagcggtgaacgccgt
gaaggtggtcgtggtgatggtcgtcgttttagcggcgaacgtcgtgaaggccgcgctccg
cgtcgtgatgactctaccggtcgtcgtcgtttcggtggtgatgcgtaa
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