Escherichia coli O44 H18 042 (EAEC): EC042_4355
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Entry
EC042_4355 CDS
T02067
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta'-subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
elo
Escherichia coli O44:H18 042 (EAEC)
Pathway
elo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
elo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EC042_4355 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elo03021
]
EC042_4355 (rpoC)
03400 DNA repair and recombination proteins [BR:
elo03400
]
EC042_4355 (rpoC)
Enzymes [BR:
elo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EC042_4355 (rpoC)
Transcription machinery [BR:
elo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EC042_4355 (rpoC)
DNA repair and recombination proteins [BR:
elo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EC042_4355 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CBG37179
UniProt:
D3GSW7
LinkDB
All DBs
Position
4659622..4663845
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG
LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggcgtcatctgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcttccccgactgcgcacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgctcgatatgccgctgcgcgatatcgaacgcgtactgtac
tttgaatcctatgtggttattgaaggcggtatgaccaacctggagcgtcagcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggggcggaagcaatccaggccctgctgaagagcatggatctggagcaagagtgtgaacag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgacc
gttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggttgacgccctgttggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagctgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccgactctgcaccgcctgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggcagttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctttccccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagcagaacgtctgtatcgctctggt
ctggcttctctgcatgcgcgcgttaaagtgcgtatcaccgagtatgaaaaagatgctaac
ggtgaattagtagcgaaaaccagcctgaaagacacgactgttggccgtgccattctgtgg
atgattgtaccgaaaggtctgccttactccatcgtcaaccaggcgctgggtaaaaaagca
atctccaaaatgctgaacacctgctaccgcattctcggtctgaaaccgaccgttattttt
gcggaccagatcatgtacaccggcttcgcctatgcagcgcgttctggtgcatctgttggt
atcgatgacatggtcatcccggagaagaaacacgaaatcatctccgaggcagaagcagaa
gttgctgaaattcaggagcagttccagtctggtctggtaactgcgggcgaacgctacaac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaactgaaaccgtgattaaccgtgacggtcaggaagagaagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctc
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaaaactgcgaactccggttacctgactcgtcgtctg
gttgacgtggcgcaggacctggtggttaccgaagacgattgtggtactcatgaaggtatc
atgatgactccggttatcgaaggtggtgacgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtaactgctgaagacgttctgaagccgggtactgctgatatcctcgttccgcgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagagaactctgtcgacgcggtt
aaagtacgttctgttgtatcttgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggtgttatcgcggca
cagtccatcggtgaaccgggtacacagctgaccatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgtgaagtcggttgtgaactccagcggtaaactggttatcacttcccgtaacacc
gaactgaaactgatcgacgaattcggtcgtaccaaagaaagctacaaagtaccttacggt
gcggtactggcgaaaggcgatggcgaacaggttgctggcggcgaaaccgttgcaaactgg
gacccgcacaccatgccggttatcaccgaagtaagcggttttgtacgctttactgacatg
atcgacggtcagaccattacgcgtcagaccgacgaattgaccggtctgtcttcgctggtg
gttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatc
gttgatgctcagggtaacgacgttctgatcccgggtaccgatatgccagcgcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcgtacagatcagctctggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggtatcgtttccttcggtaaagaaaccaaaggtaaacgtcgtctggttatcaccccggta
gatggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgtaatttccgacggtccggaagcgccgcacgacatt
ctgcgtctgcgtggtgttcatgctgttactcgttacatcgttaacgaagtacaggacgta
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagctaccatcgttaacgcgggcagctccgacttcctggaaggcgaacaggtt
gaatactctcgcgtcaagatcgcaaaccgcgaactggaagcgaacggcaaagtgggtgca
acttactcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagaccactcgcgtgctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggctggt
accggttacgcgtatcaccaggatcgtatgcgtcgccgtgctgcgggtgaagctccggct
gcaccgcaggtgactgcagaagacgcatctgccagcctggcagaactgctgaacgcaggt
ctgggcggttctgataacgagtaa
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integrated database retrieval system
