Escherichia coli P12b: P12B_c3356
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Entry
P12B_c3356 CDS
T02030
Symbol
cafA
Name
(GenBank) Ribonuclease G
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
elp
Escherichia coli P12b
Brite
KEGG Orthology (KO) [BR:
elp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elp03019
]
P12B_c3356 (cafA)
03009 Ribosome biogenesis [BR:
elp03009
]
P12B_c3356 (cafA)
Messenger RNA biogenesis [BR:
elp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P12B_c3356 (cafA)
Ribosome biogenesis [BR:
elp03009
]
Prokaryotic type
rRNA processing factors
P12B_c3356 (cafA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AFG42180
LinkDB
All DBs
Position
complement(3667777..3669246)
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AA seq
489 aa
AA seq
DB search
MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI
GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT
TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA
ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE
ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM
TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV
LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV
CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN
QEQFDVVMM
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgaattgttagtaaacgtaacgccttcggaaacgcgagtggcgtatattgat
ggcggtattctgcaggaaattcatattgaacgtgaggcgcgacgcggaatagtaggcaat
atctacaagggtcgtgtaagtcgtgtacttccgggtatgcaggcggcttttgtagatatt
gggctggataaagccgcgtttcttcatgcatccgacatcatgccgcacaccgaatgtgtg
gcgggtgaagaacaaaagcaattcacggtgcgcgacatctcggaactggttcgtcagggg
caagatctgatggtgcaggtggtgaaagatccgcttggcactaaaggtgcgcgcctgacc
accgatatcacgctcccttctcgctatctggtgtttatgccaggggcttctcacgttggg
gtttcccaacgtattgaaagcgaatcagaacgtgaacgcctgaaaaaagtggtcgcagag
tattgcgacgagcagggcgggtttatcatccgtaccgcagcggaaggggttggcgaggct
gaactggcctccgatgccgcttatctgaaacgcgtctggaccaaagttatggagcgtaaa
aaacgcccgcagacccgttatcagctgtacggcgaactggcgctggcgcagcgtgttctg
cgtgatttcgccgatgccgaactggaccgcattcgcgttgactcacgcctgacttacgaa
gcgttacttgagttcacctcggagtacattcccgagatgacaagcaagctggagcattac
acaggacgccagccgattttcgatctctttgatgtcgaaaacgaaatccagcgagcgctg
gaacgcaaagtagaactgaaatccggtggttatctcattatcgaccagaccgaagcgatg
accaccgtggatatcaataccggagcgtttgtcggtcatcgcaatctggacgacaccatt
ttcaataccaatattgaagcgacgcaggctatcgctcgccagttacggttgcgtaatctg
ggcgggattatcattattgatttcatcgatatgaataatgaagatcaccgccgccgagtg
ctgcactcgctggagcaggcgttgagcaaagaccgggtgaaaaccagcgttaatggtttt
tcggcgctggggctggtggagatgacgcgtaaacgcacccgcgaaagcattgagcacgta
ctgtgtaacgaatgcccaacctgccacggtcgcggaacggtgaaaaccgtggaaacggta
tgctatgaaatcatgcgcgagattgttcgtgtccaccatgcttacgactccgaccgtttc
ctggtctatgcttctccggcagtagctgaagccttgaaaggcgaagagtcacactcgctg
gcggaagtggaaatttttgttggcaaacaggttaaagtacaaattgaaccgctctataac
caggagcagtttgacgtcgtaatgatgtaa
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