Escherichia coli P12b: P12B_c4100
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Entry
P12B_c4100 CDS
T02030
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
elp
Escherichia coli P12b
Pathway
elp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
elp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P12B_c4100 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elp03021
]
P12B_c4100 (rpoC)
03400 DNA repair and recombination proteins [BR:
elp03400
]
P12B_c4100 (rpoC)
Enzymes [BR:
elp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P12B_c4100 (rpoC)
Transcription machinery [BR:
elp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P12B_c4100 (rpoC)
DNA repair and recombination proteins [BR:
elp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P12B_c4100 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AFG42913
LinkDB
All DBs
Position
4495716..4499855
Genome browser
AA seq
1379 aa
AA seq
DB search
MIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKC
GVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIE
GGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNET
NSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDL
YRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA
DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR
GLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ
LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTS
LKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTG
FAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAA
ANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA
KPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLV
VTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQW
CDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGT
QLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEF
GRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITR
QTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQ
LEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKE
TKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHA
VTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIA
NRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLK
ENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgatccgttcatggtctttcggtgaagttaaaaagccggaaaccatcaactaccgtacg
ttcaaaccagaacgtgacggccttttctgcgcccgtatctttgggccggtaaaagattac
gagtgcctgtgcggtaagtacaagcgcctgaaacaccgtggcgtcatctgtgagaagtgc
ggcgttgaagtgacccagactaaagtacgccgtgagcgtatgggccacatcgaactggct
tccccgactgcgcacatctggttcctgaaatcgctgccgtcccgtatcggtctgctgctc
gatatgccgctgcgcgatatcgaacgcgtactgtactttgaatcctatgtggttatcgaa
ggcggtatgaccaacctggaacgtcagcagatcctgactgaagagcagtatctggacgcg
ctggaagagttcggtgacgaatttgacgcgaagatgggtgcggaagcaatccaggctctg
ctgaagagcatggatctggagcaagagtgcgaacagttgcgtgaagagctgaacgaaacc
aactccgaaaccaagcgtaaaaagctgaccaagcgtatcaaactgttggaagcgttcgtt
cagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagat
ctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctg
tatcgtcgcgtcattaaccgtaacaaccgtctgaaacgtctgctggatctggctgcgccg
gacatcatcgtacgtaacgaaaaacgtatgctgcaggaagcggttgacgccctgctggat
aacggtcgtcgcggtcgtgcaatcaccggttctaacaagcgtcctctgaaatctttggcc
gacatgatcaaaggtaaacagggtcgtttccgtcagaacctactcggtaagcgtgttgac
tactccggtcgttctgtaatcaccgtaggtccatacctgcgtctgcatcagtgcggtctg
ccgaagaaaatggcactggagctgttcaaaccgttcatctacggcaagctggaactgcgt
ggtcttgctaccaccattaaagctgcgaagaaaatggttgagcgcgaagaagctgtcgtt
tgggatatcctggacgaagttatccgcgaacacccggtactgctgaaccgtgcaccgact
ctgcaccgtctgggtatccaggcatttgaaccggtactgatcgaaggtaaagctatccag
ctgcacccgctggtttgtgcggcatataacgccgacttcgatggtgaccagatggctgtt
cacgtaccgctgacgctggaagcccagctggaagcgcgtgcgctgatgatgtctaccaac
aacatcctgtccccggcgaacggcgaaccaatcatcgttccgtctcaggacgttgtactg
ggtctgtactacatgacccgtgactgtgttaacgccaaaggcgaaggcatggtgctgact
ggcccgaaagaagcagaacgtctgtatcgctctggtctggcttctctgcatgcgcgcgtt
aaagtgcgtatcaccgagtatgaaaaagatgctaacggtgaattagtagcgaaaaccagc
ctgaaagacacgactgttggccgtgccattctgtggatgattgtaccgaaaggtctgcct
tactccatcgtcaaccaggcgctgggtaaaaaagcaatctccaaaatgctgaacacctgc
taccgcattctcggtctgaaaccgaccgttatttttgcggaccagatcatgtacaccggc
ttcgcctatgcagcgcgttctggtgcatctgttggcatcgatgacatggtcatcccggag
aagaaacacgaaatcatctccgaggcagaagcagaagttgctgaaattcaggagcagttc
cagtctggtctggtaactgcgggcgaacgctacaacaaagttatcgatatctgggctgcg
gcgaacgatcgtgtatccaaagcgatgatggataacctgcaaactgaaaccgtgattaac
cgtgacggtcaggaagagaagcaggtttccttcaacagcatctacatgatggccgactcc
ggtgcgcgtggttctgcggcacagattcgtcagcttgctggtatgcgtggtctgatggcg
aagccggatggctccatcatcgaaacgccaatcaccgcgaacttccgtgaaggtctgaac
gtactccagtacttcatctccacccacggtgctcgtaaaggtctggcggataccgcactg
aaaactgcaaactccggttacctgactcgtcgtctggttgacgtggcgcaggacctggtg
gttaccgaagacgattgtggtacccatgaaggtatcatgatgactccggttatcgaaggt
ggtgatgttaaagagccgctgcgcgatcgcgtactgggtcgtgtaactgctgaagacgtt
ttgaagccgggtactgctgatatcctcgttccgcgcaacacgctgctgcacgaacagtgg
tgtgacctgctggaagagaactctgtcgacgcggttaaagtacgttctgttgtatcttgt
gacaccgactttggtgtatgtgcgcactgctacggtcgtgacctggcgcgtggccacatc
atcaacaagggtgaagcaatcggtgttatcgcggcacagtccatcggtgaaccgggtaca
cagctgaccatgcgtacgttccacatcggtggtgcggcatctcgtgcggctgctgaatcc
agcatccaggtgaaaaacaaaggtagcatcaagctcagcaacgtgaagtcggttgtgaac
tccagcggtaaactggttatcacttcccgtaatactgaactgaaactgatcgacgaattc
ggtcgtaccaaagaaagctacaaagtaccttacggtgcggtactagcgaaaggcgatggc
gaacaggttgctggcggcgaaaccgttgcaaactgggacccgcacaccatgccggttatc
accgaagtaagcggttttgtacgctttactgacatgatcgacggtcagaccattacgcgt
cagacagacgaattgaccggtctgtcttcgctggtggttctggattccgcagaacgtacc
gcaggtggtaaagatctgcgtccggcactgaaaatcgttgatgctcagggtaacgacgtt
ctgattccgggtaccgatatgcctgcgcagtacttcctgccgggtaaagcgattgttcag
ctggaagatggcgtacagatcagctctggtgacaccctggcgcgtattccgcaggaatcc
ggcggtaccaaggacatcaccggtggtctgccgcgcgttgcggacctgttcgaagcacgt
cgtccgaaagagccggcaatcctggctgaaatcagcggtatcgtttccttcggtaaagaa
accaaaggtaaacgtcgtctggttatcaccccggtagacggtagcgatccgtacgaagag
atgattccgaaatggcgtcagctcaacgtgttcgaaggtgaacgtgtagaacgtggtgac
gtaatttccgacggtccggaagcgccgcacgacattctgcgtctgcgtggtgttcatgct
gttactcgttacatcgttaacgaagtacaggacgtataccgtctgcagggcgttaagatt
aacgataaacacatcgaagttatcgttcgtcagatgctgcgtaaagctaccatcgttaac
gcgggcagctccgacttcctggaaggcgaacaggttgaatactctcgcgtcaagatcgca
aaccgcgaactggaagcgaacggcaaagtgggtgcaacttactcccgcgatctgctgggt
atcaccaaagcgtctctggcaaccgagtccttcatctccgcggcatcgttccaggagacc
actcgcgtgctgaccgaagcagccgttgcgggcaaacgcgacgaactgcgcggcctgaaa
gagaacgttatcgtgggtcgtctgatcccggcaggtaccggttacgcgtaccaccaggat
cgtatgcgtcgccgtgctgcgggtgaagctccggctgcaccgcaggtgactgcagaagac
gcatctgccagcctggcagaactgctgaacgcaggtctgggcggttctgataacgagtaa
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