Escherichia coli O55 H7 RM12579 (EPEC): ECO55CA74_00900
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Entry
ECO55CA74_00900 CDS
T02066
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
elr
Escherichia coli O55:H7 RM12579 (EPEC)
Pathway
elr03030
DNA replication
elr03430
Mismatch repair
elr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
elr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECO55CA74_00900 (dnaE)
03430 Mismatch repair
ECO55CA74_00900 (dnaE)
03440 Homologous recombination
ECO55CA74_00900 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elr03032
]
ECO55CA74_00900 (dnaE)
03400 DNA repair and recombination proteins [BR:
elr03400
]
ECO55CA74_00900 (dnaE)
Enzymes [BR:
elr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ECO55CA74_00900 (dnaE)
DNA replication proteins [BR:
elr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ECO55CA74_00900 (dnaE)
DNA repair and recombination proteins [BR:
elr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ECO55CA74_00900 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AEZ38812
LinkDB
All DBs
Position
208418..211900
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW
LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES
YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGNMSTEDYLVKRAKEGL
EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFSEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccacgtttcgtacacctgcgggtgcacagcgactactcgatgatcgatggc
ctggccaaaaccgcaccgctggtaaaaaaggcggcggcgttgggtatgccagcactggcg
atcaccgatttcaccaacctttgcggtctggtgaagttctacggagcgggacatggcgca
gggattaagcctatcgtcggggcagattttaacgtccagtgcgacctgctgggtgatgag
ttaacccacctgacggtactggcggcgaacaataccggctatcagaatctgacgttgctg
atctcaaaagcgtatcagcgcgggtacggtgccgccgggccgatcatcgatcgcgactgg
cttatcgaattaaacgaagggttgatccttctttccggcgggcgcatgggcgacgtcgga
cgcagtcttttgcgtggtaacagcgcgctggtagatgagtgtgtcgcgttttatgaagaa
cacttcccggatcgctattttctcgagctgatccgcaccggcaggccggatgaagaaagc
tatctgcacgcggcggtggaactggcggaagcgcgcggtttgcccgtcgtggcgactaac
gatgtgcgctttatcgacagcagcgactttgacgcacacgaaatccgcgtcgcgatccac
gacggctttaccctcgacgatcctaaacgcccgcgtaactattcgccgcagcaatatatg
cgtagcgaagaggagatgtgcgagctgtttgccgacatcccagaagcccttgccaacacc
gttgagatcgccaaacgctgtaacgtaactgtgcgtcttggtgaatacttcctgccgcag
ttcccgaccgggaacatgagcaccgaagattatctggtcaagcgtgcaaaagagggcctg
gaagagcgtctggcctttttattccctgatgaggaagaacgtgttaagcgccgcccggaa
tatgacgaacgtctggagactgaacttcaggttatcaaccagatgggcttcccgggctac
ttcctcatcgttatggaatttatccagtggtcgaaagataacggcgtaccggtagggcca
ggccgtggctccggtgcgggttcactggtggcctacgcgctgaaaatcaccgacctcgat
ccgctggaatttgacctgctgttcgaacgtttccttaacccggaacgtgtctccatgcct
gacttcgacgttgacttctgtatggagaaacgcgatcaggttatcgaacacgtagcggac
atgtacggtcgtgatgcggtatcgcagattatcaccttcggtacgatggcggcgaaagcg
gtgatccgcgacgtaggccgcgtgctggggcatccgtacggctttgtcgatcgtatctcg
aaactgatcccgcccgatccggggatgacgctggcgaaagcgtttgaagccgagccgcag
ctgccggaaatctacgaagcggatgaagaagttaaggcgttgatcgacatggcgcgcaaa
ctggaaggggtcacccgtaacgccggtaagcacgccggtggggtggttatcgcgccgacc
aaaattaccgattttgcgccgctttattgcgatgaagagggcaaacatccggtcacccag
tttgataaaagcgacgttgaatacgccggactggtgaagttcgacttccttggtttgcgt
acgctcaccatcatcaactgggcgctggagatgatcaacaagcggcgggcgaagaatggc
gagccgccgctggatatcgccgcgatcccgctggatgacaagaaaagcttcgacatgctg
caacgctcggaaaccacggcggtattccagcttgaatcgcgcggcatgaaggacctgatc
aagcgtctgcaacctgactgcttcgaagatatgatcgcactggtggcactgttccgccct
ggtccgttgcaatcagggatggtggataactttatcgaccgtaaacatggtcgcgaagag
atctcctatccggacgtgcagtggcagcatgaaagcctgaaaccggtactggagccaacc
tacggcattatcctgtatcaggaacaggtcatgcagattgcgcaggtgctttctggttat
accctcggtggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaagagatg
gctaagcaacgttctgtattttctgaaggtgcagaaaagaacggaatcaacgccgaactg
gcgatgaaaatcttcgacctggtggagaaattcgctggttacggatttaacaaatcgcac
tctgcggcctatgctttggtgtcatatcaaacattatggttgaaagcgcactatccggca
gagtttatggcggcggtaatgaccgccgatatggacaacaccgagaaggtggtgggcctg
gtggatgagtgctggcggatggggctgaaaatcctgccaccagatataaactccggtctt
taccatttccacgtcaacgacgacggcgaaatcgtgtatggtattggcgcgatcaaaggg
gtaggtgaaggtccgattgaggcgatcatcgaagcccgtaataaaggcggctacttccgc
gaactgtttgatctctgcgcccgaaccgacaccaaaaagttgaaccgtcgcgtgctggaa
aaactgatcatgtccggggcgtttgaccgtcttgggccacatcgcgcggcgctgatgaac
tcgctgggcgatgcgttaaaagcggcagatcaacacgcgaaagcggaagctatcggtcag
gccgatatgttcggcgtgctggccgaagagccggaacaaattgaacaatcctatgccagc
tgccaaccgtggccggagcaggtggtattagatggggaacgtgaaacgttaggcctgtac
ctgaccggacaccctatcaaccagtatttaaaagagattgagcgttatgtcggaggcgta
aggctgaaagacatgcacccgacagaacgtggtaaagtcatcacggctgcggggctcgtt
gttgccgcgcgggttatggtcaccaagcgcggcaatcgtatcggtatctgcacgctggat
gaccgttccgggcggctggaagtgatgttgtttactgacgccctggataaataccagcat
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggtgggcttaaaatgaccgctcgcgaagtgatggatattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgctctgggacaattccagtacatctctactatcag
agggcggatgcacgcgcgcggttgcgttttggcgcgacgtggcgtgtctctccgagcgat
cgtttattaaacgatctccgtggcctcattggttcggagcaggtggaactggagtttgac
taa
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