Escherichia coli O55 H7 RM12579 (EPEC): ECO55CA74_04885
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Entry
ECO55CA74_04885 CDS
T02066
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
elr
Escherichia coli O55:H7 RM12579 (EPEC)
Pathway
elr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
elr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECO55CA74_04885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elr03400
]
ECO55CA74_04885
DNA repair and recombination proteins [BR:
elr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ECO55CA74_04885
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ECO55CA74_04885
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SBDS_domain_II
IF2_N
UB2H
DUF1844
PRDA1_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEZ39586
LinkDB
All DBs
Position
1026471..1028492
Genome browser
AA seq
673 aa
AA seq
DB search
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ
YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR
FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG
QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD
QLHQLRELFIAAS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaccgttcaaactgaattccgcttttaaaccttctggcgatcagccagaggcg
attcgacgtctcgaagaggggctggaagatggcctggcgcaccagacgttacttggtgtg
actggttccgggaaaaccttcaccattgccaatgtcattgctgaccttcagcgccctacc
atggtacttgcgcccaacaaaacgctggcggcccagctgtatggcgaaatgaaagagttc
ttcccggaaaacgcggtggaatatttcgtctcctactacgactactatcagccagaagcc
tatgtaccgagttccgacaccttcattgagaaagatgcctcggtaaacgaacatatcgaa
cagatgcgtttgtccgccaccaaagcgatgctggagcggcgtgatgttgttgtggtcgcg
tctgtttccgcgatttatggtctgggcgatcctgatttatatctcaagatgatgctccat
ctcacggtcggtatgattatcgatcagcgcgcgattctgcgccgactggcggagctgcaa
tacgctcgtaatgatcaagcattccagcgtggtactttccgtgttcgtggcgaggtgatt
gatatcttcccggcagaatcggatgacattgcacttcgcgtggaactgtttgacgaggaa
gtggaacgattgtcgttatttgacccgctaaccgggcagattgtttccaccattccacgt
tttaccatctacccgaaaacgcactacgtcacaccgcgcgagcgcatcgtacaggcgatg
gaggagatcaaagaagagctggccgccagacgcaaagtgctattggaaaacaacaaactg
ctggaagagcagcggctgacccagcgtacccagtttgatctggagatgatgaacgagctg
ggctactgttcggggattgaaaactactcgcgcttcctctccggtcgtggaccgggtgag
ccaccgccgacgctgtttgattacctgcctgccgatgggctgctggtggtcgatgaatct
cacgtcaccattccacaaattggcggcatgtatcgcggtgaccgggcgcgtaaagagaca
ctggtggagtacggcttccgcctgccatcagcgctggataaccgtccgctgaaatttgaa
gagttcgaagcattagcgccgcaaaccatctatgtttcggcgacgccaggtaattatgag
ctggaaaaatccggcggcgatgtggtggatcaggtggtgcgtccaaccggattgcttgat
ccgattatcgaagtgcggccagtggcgacacaggttgatgatcttctttcggagattcgt
cagcgagcggcaattaacgaacgcgtactggtcaccacactgaccaagcgaatggcggaa
gatcttaccgaatatctcgaagaacacggtgagcgcgtgcgttatcttcactcagatatc
gacaccgtcgaacgtatggagattatccgcgacttgcgtctgggcgagttcgacgtgctg
gtggggatcaacttactgcgcgaaggtctggatatgccggaggtttcgctggtggcgatc
ctcgacgccgacaaagaaggcttcctgcgttctgaacgttcgttgatccagactattggt
cgtgcggcgcgtaacgttaacggtaaagcgattctctacggcgataagatcaccccgtca
atggcgaaagcgattggcgaaaccgaacgtcgccgcgagaaacagcagaagtacaacgag
gaacacggcattacgccgcaaggcttgaacaagaaagtggtcgatatcctggcgttgggg
cagaacattgctaaaaccaaagcgaagggcagaggaaaatcgcgaccgattgttgagccg
gataatgtgccgatggatatgtcgcctaaagcgttgcaacagaaaatccatgagctggaa
gggttaatgatgcaacacgcgcaaaatctggagttcgaagaagcggcacaaattcgtgac
cagttgcatcagctgcgtgaattgtttatcgcggcttcgtga
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