Escherichia coli O55 H7 RM12579 (EPEC): ECO55CA74_04975
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Entry
ECO55CA74_04975 CDS
T02066
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
elr
Escherichia coli O55:H7 RM12579 (EPEC)
Pathway
elr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ECO55CA74_04975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elr03019
]
ECO55CA74_04975
Enzymes [BR:
elr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ECO55CA74_04975
Messenger RNA biogenesis [BR:
elr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ECO55CA74_04975
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AEZ39604
LinkDB
All DBs
Position
1043818..1045185
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AA seq
455 aa
AA seq
DB search
MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK
RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI
GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGGRGQQQPRRGEGGAKS
ASAKPAEKPSRRLGDAKPAGEQQRRRRPRKPAAAQ
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattctttgggtttaagccctgatatcctgcgcgccgttgccgagcagggt
taccgtgaacccacccctattcagcagcaggcgatccctgcggtgctggaaggccgcgac
ctgatggctagcgcccagaccggcaccggcaaaacagcgggctttacgctgccgctgttg
caacacctgatcactcgccagccgcacgccaaagggcgtcgtccggtacgtgcgctcatt
cttaccccgacccgtgaactggcggcgcagattggcgaaaacgtccgtgattacagcaaa
tacctgaacattcgttcgctggtggtgtttggcggtgtcagcattaacccacaaatgatg
aagttgcgcggcggcgttgatgtgctggtggcaacgccgggacgtttgctggacctggaa
catcagaatgcagtgaagctggatcaggttgaaatcctcgtcctcgatgaagctgaccgc
atgctcgacatgggctttatccacgatatccgtcgcgtgttaacaaaactacctgcgaag
cgccagaacctgttgttctccgcgaccttctctgacgatattaaagccctggcggaaaaa
ctgttgcacaacccgctggaaatagaagtggcacgccgcaataccgcgtctgatcaggtg
acccagcatgttcactttgttgataagaaacgcaagcgcgaattgctgtcgcacatgatt
gggaaagggaactggcagcaggtgctggtgtttacccgtaccaaacatggcgctaaccat
ctcgctgaacagcttaataaagatggcatccgtagtgcggcgatccacggtaataaatcg
caaggtgcgcgtacccgtgcgctggccgattttaaatcgggcgatattcgtgtactggtg
gcaactgacatcgctgcgcgcggtctggatatcgaagagttgccgcacgtcgtcaactat
gaactgccaaacgtaccggaagattatgtccaccgtatcgggcgtactggccgtgcggcg
gcaactggcgaagcattgtcgctggtgtgtgttgatgaacacaaactgctgcgtgatatc
gaaaaactgctgaaaaaagagatcccgcgcattgcgattccgggttatgagccggacccg
tcaatcaaagccgaaccgatccagaacggtcgccagcaacgtggcggcggcggtcgtggg
caaggtggtggtggtcgcggtcaacagcaaccacgccgtggagaaggtggtgcgaaatca
gctagcgcgaagcctgcagaaaaaccatctcgtcgtcttggcgatgccaaaccggcaggc
gaacaacaacgccgtcgccgtccgcgtaaacctgccgctgcgcagtaa
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