Escherichia coli O55 H7 RM12579 (EPEC): ECO55CA74_19670
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Entry
ECO55CA74_19670 CDS
T02066
Name
(GenBank) RtcB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
elr
Escherichia coli O55:H7 RM12579 (EPEC)
Brite
KEGG Orthology (KO) [BR:
elr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
elr03016
]
ECO55CA74_19670
Enzymes [BR:
elr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ECO55CA74_19670
Transfer RNA biogenesis [BR:
elr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ECO55CA74_19670
Prokaryotic type
tRNA splicing ligases
ECO55CA74_19670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AEZ42491
LinkDB
All DBs
Position
complement(4067001..4068227)
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AA seq
408 aa
AA seq
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MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAELRQAIETAVPHGRTTGRCKRDK
GAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQ
LFASLNRDVMMENVVTALQSITQKTVRQPQTLAMEEINCHNNYVQKEQHFGEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKMFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattactgaccactgaaaatgccccggtaaaaatgtggaccaaaggcgtg
ccggtagaagccgatgcgcgtcagcaacttattaatacggcgaagatgccgtttattttc
aaacatattgcggtaatgcctgatgtacacctgggtaaaggttccaccattggtagcgtg
atcccgaccaaaggggcgattattccggcggcggtgggcgtggatattggctgtggaatg
aacgcactacgtaccgctttaacggcggctgacctgccggaaaacctggcggagctgcgt
caggcgattgaaactgcggtgccgcacgggcgtaccactggccgttgtaaacgtgataaa
ggcgcatgggaaaacccgcctgttaacgtcgatgcgaaatgggctgagctggaggccggt
tatcagtggttaacgcaaaaatatccgcgtttccttaacactaacaactataaacacctg
ggaacgctgggaacgggtaaccactttattgaaatctgccttgatgagtcggaccaggtg
tggattatgctgcactccggttcacgcggaattggtaatgccatcgggacttactttatc
gatctggcgcaaaaagagatgcaggaaacgcttgaaacattgccgtcgcgtgatctggcg
tactttatggaaggtacggaatactttgatgattacctgaaagccgtggcctgggcgcag
ctttttgccagccttaaccgcgatgtgatgatggaaaacgtagtaacggcgttgcagagc
attacgcagaaaacggtcagacagccacaaacgctggcgatggaagagatcaactgtcac
aacaactatgtgcaaaaagaacagcactttggtgaagagatctacgtgacgcgtaaaggc
gcggtgtctgcgcgtgctggtcaatatggaattattccagggtcgatgggagcgaaaagc
tttatcgtccgtgggctgggaaatgaagagtcgttctgttcgtgcagccacggtgccggg
cgggttatgagccgtactaaagcgaaaaaaatgttcagcgtggaagatcaaattcgtgcc
accgcgcatgtggaatgccgtaaagatgccgaagtgatcgacgaaatcccgatggcgtat
aaagatattgatgcggtgatggcggcacaaagcgatctggtggaagttatctacacccta
cgtcaggtggtgtgcgtaaaaggataa
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