Esox lucius (northern pike): 105005659
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Entry
105005659 CDS
T04894
Symbol
col11a2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
els
Esox lucius (northern pike)
Pathway
els04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
els00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105005659 (col11a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105005659 (col11a2)
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105005659 (col11a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
105005659
NCBI-ProteinID:
XP_028978562
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All DBs
Position
LG10:19955510..19998373
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AA seq
2111 aa
AA seq
DB search
MDIRDCPFRKKRRPWCVDLSSFALVTLMLSLFQLPVARADPVDVLRVLQLPSLPEGVRKV
PGFCTSRRSGTADHAYRITKKAQISAPTSQLFSGPFPENFSIMALVKAQSGLQAFLLSIY
SEQGVQQLGMELGRSPVFLYEDQNGKPAPEDYPIFAGVNLADGKWHRIAISVSKQSVTLI
LDCKKRVTRPLPRSPSPVMDTKGITVFGARLLDEEVFQGDIQQLLIASNSQAAFDFCEHY
SPDCDSPLPKIQAQDPNTYKNKNANGNANKPKPVVVKAEKPVVIKADKPVVVKVPKHTVV
KVAKPGPSKPAKITAAAPATAKSAKAVPATPKPTKAKPTAAKSKPTAYEVLLARIKPTAV
TRVVKPTSAPKNGGEKKLNGKPVVEKKVNGGAKVNGNGKPAVLKKVNGDAKVNGKPVVEK
KVNGGAKVNGNGNSKIAKDKKMNGKNGGDKKANGNGVELAKPETTKVPPVKPVTKVKVDK
TVVSKGKPTKPVVAKAEVKQAKTVITKVPVPKVEVSKNKFKVVKTEVTKARPTQSVVNKV
PPFLKPAQKKELPSPQPAPEKTKMVLDVNNFKSMTKKMPPFDKTALSGIQVPVTEKPKKK
TGNGYQQDVETANSEAGPTPTETDYFYEEEVPQPENEVIGEEVTKGQVEETVVAEEVDLA
KAGGEVESFTEEYVAGDLGGKEYDYSYKDYNEPLVDGESNNNMGPALSAVTDEGHASVSG
VKGEKGEPAVLEPGMLIEGPPGPEGPAGLPGPNGPSGPPGSVGDPGERGLPGRAGLPGAD
GVPGPPGTSVMLPFRFGSSGGDKGPVVSAQEAQAQAILSQARLALKGPPGPMGYTGRPGP
LGTPGSPGLKGESGDPGPQGPRGPQGLSGPPGKSGRRGRAGADGSRGMPGESGPKGDRGF
DGLPGLPGDKGHRGDTGGLGPTGSPGEDGERGDDGDIGPRGLPGEPGPRGLLGPKGPNGI
PGPPGVRGNDGPHGPKGNLGPQGEPGPPGQQGTSGTQGMPGPQGAHGPPGEKGPTGKPGL
PGMPGADGPPGHPGKEGPVGTKGNQGPNGPQGTIGYPGPRGIKGAQGIRGLKGHKGEKGE
DGFPGIKGDFGVKGERGEIGMPGPRGEDGPEGPKGRVGPPGELGPIGLVGEKGKLGVPGL
PGYPGRLGPKGSLGFPGFPGTNGEKGTRGLIGKSGPRGQRGPTGPRGQRGPRGSTGKPGA
KGTSGSDGPSGPAGERGLPGPQGANGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGP
PGPPGVVGPQGPSGETGPLGERGHPGPPGPPGEQGLPGPSGKEGTKGDPGPPGGPGKDGP
PGLRGFPGERGMPGTPGGGGLKGSEGPPGPPGPAGSPGERGQAGGAGPIGPPGRPGPQGP
PGPAGEKGVPGEKGPIGPAGRDGVQGPVGLPGPAGSIGVPGEDGDKGEVGEHGQKGAKGS
KGEHGPPGPPGPMGPVGQPGAAGADGELGARGQQGPFGAKGDEGSRGFPGAPGPIGLQGL
PGPSGEKGETGDVGPMGPPGPPGPRGPAGPSGADGPQGPPGGLGNPGNQGEKGEPGEAGP
PGIGGEPGKKGPRGERGDKGESGQPGASGPAGGRGGPGDDGPKGNPGPVGFPGDPGPPGE
VGPRGQDGAKGERGEDGEQGQAGSPGPTGENGPPGGPGKRGLPGTRGPEGRQGEKGTKGD
PGANGPAGKTGPVGPQGQPGKPGTEGLRGLPGSVGEQGSPGPAGQKGPPGPLGPPGLPGL
RGESGDKGEKGHSGLIGLIGPPGEQGEKGDRGLPGPQGTPGSKGDTGVPGGTGPIGPAGP
AGLPGPQGVKGAKGASGGAGPKGEKGVSGPPGPPGPPGEVIQPLPIQIPKKSKRSIDASR
MLYDTEMADASDFLRDSEGMQEIFGSLDSLRKEIDTMRSPLGTQDSPARTCHDLKLLHSN
YTDGDYWIDPNQGCSRDSLKVFCNFTAGVETCLYPSKSMDTVKINSWTSEKPGSWFSEFA
TGSKLSYVDSDGKPVGVVQLGFLRLLSIQARQNITYHCHRSVAWADRTDNNGHKRALHFQ
GANDEELSFENSPYIKALIDGCSYRKGFDRTVLEVNTPQVEQLPLRDLKITDFGETNQQF
GFEVGPVCFLG
NT seq
6336 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgagattgcccttttcggaagaagcggagaccatggtgcgtggacctttcc
tcttttgccttggtaaccctgatgctctcgctgttccaactacccgtggctcgagcagac
ccagtggatgtgttgcgggttctccagctgccctctctccctgagggggttcggaaggtt
ccaggcttctgcacctcccgccgctctggcactgctgaccatgcctaccgcatcaccaag
aaggcccagatctctgcccccacaagtcaactcttctcaggtcctttcccagagaacttc
tccatcatggctctggtcaaggcccagtcgggcctccaggccttcctgctgtctatctac
agtgagcagggagtgcagcagctgggcatggagctgggacgctcccccgtcttcctgtac
gaggaccagaacggcaaacccgcccctgaggactaccccatcttcgcgggcgtgaacctg
gctgacggcaagtggcatcgcatcgctatctccgtgtcgaagcagagcgtcactctgatc
ctggactgtaagaagcgcgtgacccgccccctgccgcgcagccccagccccgtgatggac
accaagggaatcactgtgtttggagcacgcctgttggatgaggaggtcttccagggagac
atccaacagctgctgattgcatccaactctcaagctgcttttgacttctgtgaacactac
agccctgactgtgactcacccctgcccaagatccaggcccaggaccccaacacatacaag
aacaagaatgccaatggcaacgctaataagcccaaacctgtagtagttaaagctgaaaaa
cctgtagtaatcaaagcggacaaacctgtagtagttaaggtgcccaaacacacagtagtt
aaagtggcaaaacctggcccatctaaacctgcaaaaattacagctgctgcacctgccaca
gctaaatcagctaaagcagtacctgctacccccaagcccaccaaagccaagcccactgca
gccaaatccaaacctactgcttatgaagtcctcttggccaggatcaaacccaccgcagta
acacgagtggttaagcccacatctgcccccaaaaatggcggtgaaaaaaagcttaacggc
aaacctgtagttgagaagaaagttaatggtggagccaaagttaatggcaatggcaaacct
gctgttctgaagaaagtcaatggcgatgccaaagttaatggcaaacctgtagttgagaag
aaagtaaatggtggagccaaagtcaatggtaatggaaacagtaagattgctaaggataaa
aaaatgaatggcaaaaacggtggtgacaaaaaagctaacggcaatggtgtagaactagca
aaacctgaaaccactaaagtcccaccagtaaaaccagtcactaaagttaaagtagataaa
actgtggtcagcaaagggaagccaacaaagccagtggtagcaaaagctgaggtcaaacaa
gcaaagacagtaattaccaaagtaccagttccaaaagttgaggtatcaaaaaacaaattc
aaagtagtgaaaaccgaggtcacaaaagcccgtccaacacaatcagttgtcaataaagtc
cctcccttcctcaaacctgcacagaagaaagagctgccaagcccacaacctgcaccagag
aaaaccaagatggtgcttgatgtaaataacttcaaatcgatgaccaaaaaaatgcctccc
ttcgacaagaccgcactcagtggcattcaagtccctgtgacagaaaaaccgaagaagaaa
acgggcaacggttatcaacaggatgtagaaactgcaaattctgaggctggccccacccct
acagagacggattatttttatgaggaggaggtcccacagccagagaatgaggtgattgga
gaagaagtgaccaaaggccaggtggaggagacagtggtggcggaggaggtagatttggcc
aaagcaggtggggaggtggagtccttcacagaggagtatgtggctggagacctgggtggg
aaggaatatgactattcctacaaggactacaatgagccactggtcgacggggagtccaac
aacaacatgggccccgccctgtctgctgtgacagacgagggacacgcctcagtgagtgga
gtgaaaggagagaagggagaacctgctgtccttgagcctggaatgttaatcgaaggaccc
ccaggaccagagggaccagcaggtctccctggacctaacggcccatctgggcctcctggc
tctgttggcgatcctggcgagaggggtctccctggaagggctggtctccctggtgccgat
ggcgtccccggtcctcccggaacatccgtcatgctgcccttccgtttcggaagcagtgga
ggagacaaaggtcccgtggtgtccgcccaggaggcccaggctcaggccatcctgtctcag
gccaggctggctctgaagggacccccaggcccgatgggctacaccggccgacccggaccc
ctgggaacccctggaagtcctggactgaagggtgagagcggcgaccctggacctcagggc
cccaggggaccacagggtttgagcggacctcccggcaaatcaggaagaaggggccgtgct
ggagctgatggttccagaggaatgccaggggagtctgggcctaagggcgaccgtggtttc
gacggcctgcctggattgcctggtgacaaagggcacaggggtgataccggaggattggga
cccactggaagtcccggagaagacggagagaggggagatgatggagacatcggacccaga
gggcttccaggtgaaccaggacctcgtggtttgcttgggcctaaaggtccaaacggaatc
ccaggacctcccggtgtgcgtggaaacgatgggccccatggtcctaaaggaaacttgggt
ccccaaggtgagcctggccctccaggacagcagggtacatcaggaacacagggaatgcct
gggccccagggagcccatggccccccaggagaaaagggccccacaggaaaacctggtctc
ccaggaatgcccggagccgacggcccccctggtcacccagggaaggaaggacctgtcggc
actaaaggaaaccagggcccgaacggacctcagggaaccattggctatcctgggcctcgt
ggcattaagggagctcaaggaatccgtggactgaagggccacaaaggagagaaaggagaa
gacggcttccctggaatcaaaggagactttggagtcaagggagagaggggagagatcggc
atgcccggcccaagaggagaggatggtcctgaggggccaaagggccgtgttgggccccct
ggcgagctgggacccatcggtctggtcggagagaagggtaaacttggtgttcctggactt
cctggctatcctggaagacttggacctaagggctccctcggtttcccaggattccctgga
accaacggcgagaagggaacaaggggtctgattggaaagtctgggcccagaggacaaaga
ggaccaacgggccccagaggtcaaagagggccaagaggttcaactggtaaaccaggagcc
aagggtacatccggaagtgacgggccttctggtccagccggagagaggggacttcctgga
cctcaaggagcaaacggtttccctgggccaaagggaccacccggaccaccaggaaaggat
ggactgcccggtcaccctggacagagaggagaagttggattccaaggaaagactggccca
cccggacctcctggtgttgttggacctcagggtccctcaggagagacaggccccctgggc
gagcgcggtcaccctgggcctccgggcccaccaggcgagcagggacttcccggaccctct
ggcaaggagggaactaaaggagaccccggtcccccaggaggacccggcaaagacggccct
ccaggactgagaggcttccccggagagagagggatgccaggcaccccgggaggcggcgga
ctgaaaggaagcgaaggcccaccaggacctcctggaccagctgggtccccaggtgagaga
ggacaggcaggtggcgcaggccccatcggaccaccgggaagacccggcccccaggggccc
ccaggacctgcaggagagaagggagttcctggcgagaaaggtccgattggcccggctggt
cgtgacggtgtccagggtccggtcggtctcccaggccctgccggatccatcggggtcccg
ggagaggacggagacaagggcgaggttggagagcacggccagaagggagcgaagggcagc
aagggagagcatggtcctcccgggccaccagggccaatgggtccagtgggtcaacccggc
gctgctggagctgatggagaactgggagccagaggtcagcaggggccatttggggccaag
ggagatgaaggatcaagaggattcccaggggccccgggtcccattggactgcagggattg
ccaggcccatcaggagagaagggagagacaggagatgtcggaccaatgggtccaccgggg
cccccaggtccacgtggcccagctggtcccagcggcgctgacggtcctcaaggtcctcct
ggtggtctgggtaaccctggaaaccagggagagaagggagagcctggagaagctggacca
cctggaatcggaggggagccgggaaagaagggccctcgtggggaacgtggcgataagggc
gagtcgggacaacccggggcttctggccctgctggtggaagaggaggacctggagacgac
ggacccaaaggaaaccctggccctgttggtttccctggtgaccccggcccccctggagaa
gtcggacccagaggtcaggacggagcaaagggagagaggggagaggacggtgaacaagga
caagctggctctccaggacccactggtgagaatggacctcctggtggacctggaaagagg
gggcttcctggaacaagaggaccagaaggacgacagggagagaagggaaccaagggagat
ccaggtgccaacggaccagcaggaaagacaggccccgtcggacctcagggtcaaccagga
aaaccaggaacggagggactgaggggtctccccggatcagtgggcgagcaaggttctcca
ggccctgccggacagaagggaccacccggaccactgggacccccaggtttgccaggactg
cgcggcgagagtggcgacaagggagagaagggtcactcaggtctcattggtctgatcggg
ccccccggagagcagggggagaagggagacaggggactgccagggcctcagggaacccct
gggtccaagggagatactggggtccctggaggcactgggccgatcggtcctgctggccct
gctggtttgcctggtcctcaaggtgtcaagggagccaagggagctagtggaggagctggt
cccaagggagagaagggtgtctcaggacctcccggacctccgggccccccaggtgaagtc
atccagcccctgcccatccagatccccaagaagtccaagcgctccatcgacgccagccgg
atgctgtacgacacggagatggccgacgccagcgacttcctgagagacagcgagggcatg
caggagatcttcggctcgctggactctctgcgaaaagagatcgataccatgcgatcccct
ctgggcacccaggacagccctgcacgcacctgccatgacctcaaactcctccattctaat
tacacagatggagattactggatcgaccccaaccagggctgctctcgtgactctctcaag
gtgttctgtaacttcaccgctggcgtcgagacctgcctgtatcccagcaagagcatggac
acggtaaagatcaactcttggacctctgagaaacccggctcctggttcagtgagtttgcc
actggcagcaagctctcgtacgtggactctgatggcaagccagtcggcgtggtccagttg
ggcttcctaaggctgctgagcatccaggcccgtcagaacatcacctaccactgccatcgt
tccgtggcctgggccgaccgcacagacaacaacggacacaagagggcgctgcacttccag
ggcgccaacgatgaggagctcagcttcgagaacagcccctacatcaaggccctgatcgac
ggctgctcttatcgcaagggcttcgacaggacagtgttggaggtgaacacaccccaggtg
gagcagcttcctctgcgggacctcaagatcacagactttggggaaaccaaccagcaattt
ggctttgaagtgggacctgtctgtttcctgggctaa
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integrated database retrieval system
