Esox lucius (northern pike): 105006146
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Entry
105006146 CDS
T04894
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
els
Esox lucius (northern pike)
Pathway
els03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105006146 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
els03400
]
105006146 (msh2)
DNA repair and recombination proteins [BR:
els03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105006146 (msh2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
105006146
NCBI-ProteinID:
XP_010862818
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Position
LG05:complement(13542458..13550720)
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AA seq
929 aa
AA seq
DB search
MAVQPKQRLSMDAAAEHGFLNYYFSMPEKPDTTFRIFDRGEYYTVHGTDALFVAKEVFKT
NGVIKTLGSGSRKLESVVLSKANFEALVRDLLLVKQYRVEVYRNHSKTKDHSWQLEYKAS
PGNLTQFEEVLFGGAEGKLAQSAGVVAVRLAVGSDGHRVLGVGYVDASLRKMGVCEFPDG
ETFCNLEALLVQLGPKECLLPQGDNTDNIRQVVQRGGVLLSDRKRSEFNSKDVTQDLNRL
LRTRRGEANACNLLPELDKQVAMSCLAAVVRYLDLLSDESNFSSFSLTTLDLSQYMRLDN
AAVQALNLFQGTLNDTSGAHSLAGLLNKCRTPQGHRLVNQWLKQPLMDKNRIEERLNLVE
CLVNDSEVRQTLQDDLLRRFPDLQRLSKKFHRRSATLQDCYRGYQAVGQIPALLLALEKH
QGSHQMLLEAVFISPLRDLQTDFIKYQEMIETTLDMNQVEHHEFLVKASFDPVLSELREK
MDSMESSMDSVLNSAARELGLDAGKTVKLECNNVLGYYLRVTCKEEKSLRNNKKFTTLDV
QKNGVRFTNSKLSSLNEDYTRSRGEYEEAQNAIVKEIISIASGYVDPLQSLSDIIAQLDA
VVSFSVASVSAPIPYVRPQLLDTDCRRLELQQARHPCLESDADTAFIPNDISLIQGERSF
YIITGPNMGGKSTFIRQVGVISLMAQIGCFVPCEKAELSMIDSVQCRVGAGDSQIKGVST
FMSEMLETAAILRSATKNSLIIIDELGRGTSTYDGFGLAWAISEHIATKIGCFCLFATHF
HELTVLATEHPTVHNLHVTALTTQHTLTMLYRVKPGVCDQSFGIHVAELACFPPAVVAMA
KQKAAELEEFQEEEPREEEGPEAKKRRSDRQEGEALIQSFLEKVKSLPAATMTDQEVKEK
LKAMKEELLAHNNAYITDLLASSTPIPST
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccaaagcagagattgtccatggatgctgcagccgaacatggcttcctc
aattactacttctccatgccggagaaaccagacaccactttcaggatctttgaccgggga
gagtactacacggtacacgggactgatgcgttattcgtcgcaaaggaggtttttaagacc
aacggagtcatcaagaccctgggctcaggaagccgtaagctggaaagtgtggttctcagc
aaggccaactttgaagccctggtcagagacctgctgctagtgaaacagtacagagtggaa
gtctataggaaccacagcaagacaaaagatcacagctggcaactggagtacaaggcatct
ccaggtaatctgacccagtttgaggaggttctttttggtggggcagagggaaaattggct
caatcggcaggagttgtggctgtacgattggctgttgggtctgacggacatcgtgtgctg
ggtgtgggctacgtggatgcttcgctgaggaaaatgggagtgtgtgagtttcctgacgga
gagactttctgtaacctggaggctctgctggtacagctgggccctaaagaatgtctgcta
ccacagggagacaacactgataacatacgacaggtggtacagcgtggaggtgtgttgctg
tcggacaggaagaggtcagagttcaatagtaaagatgtgacccaggacctcaaccgactg
ctccgaaccaggagaggagaggccaatgcctgcaaccttctgcccgaactagacaaacag
gtagccatgtcgtgtctggcagctgtggttcgttatttggatttgctgtctgacgaatca
aacttcagctctttcagcctgacgacactggacctcagtcagtatatgaggctggacaac
gcagctgtacaggccctcaacctcttccagggtacccttaatgacaccagcggagcacac
tcattggctgggctgctgaataagtgccgtacccctcagggccatcgattggttaaccag
tggctcaaacagccactcatggacaagaacaggattgaggagaggctgaacctagtggag
tgtctggtgaatgacagtgaggtccgacagacccttcaggacgatctgttgcggcggttc
ccagatctccaacgtttgtccaagaagttccaccggcgctctgcaacgctgcaggactgt
taccgtggttaccaggccgtgggccagatccctgcacttttattggctctggaaaaacat
caaggaagccaccagatgctcctggaggctgtgttcatctcccctctcagagacctgcag
actgactttatcaagtaccaggaaatgattgaaactacgctcgatatgaaccaggtggag
caccatgagttcctggtgaaggcgtcgtttgatccagtgctctctgagctgagggagaag
atggactcaatggagagcagcatggacagtgtactgaatagtgcagcacgagaactgggt
ctggatgctggtaagacggtgaagttagagtgtaacaatgtgctgggttattacctgagg
gtgacctgtaaagaggagaagagtctgaggaacaacaagaagttcacaacactggatgta
cagaagaatggagtgcgcttcaccaacagtaagctgagctctctgaatgaggactacacc
aggagcagaggggagtatgaggaggcacaaaacgccatagtgaaggagatcatcagcatc
gcctccggctatgtggaccccctgcagtcgctgagtgacataattgcccagctggatgcc
gtggtcagcttctctgtggcctcggtctctgcccccatcccctatgtcaggccacagctt
ctggatacggactgcagacgcctggagctccaacaggcccggcacccctgccttgagtca
gatgcagacacagcctttatacctaatgacatatccctcatacagggggagcggagcttc
tacatcattacaggtcctaatatgggtggaaagtcaacctttatccggcaagtgggcgtt
atctctctgatggctcagattggctgctttgtgccctgtgagaaggctgagctcagcatg
attgacagcgttcagtgccgtgtgggggcaggggatagccagatcaagggcgtgtccaca
ttcatgtctgagatgctggagacggcagctattctccgttctgccacaaagaactctctg
ataataatagatgagttgggtcgaggaacgtctacgtacgatggatttggtctggcctgg
gctatcagtgaacacatcgccaccaagatcggctgcttctgtctgtttgccactcacttc
cacgagcttaccgtgttggccaccgagcaccccactgtccataacctgcatgtcaccgct
ctgactactcaacacacactcaccatgctctaccgggtcaaaccaggtgtgtgtgaccag
agttttgggatccatgtggcggagttggcttgttttccacctgctgtggttgccatggcg
aagcagaaggcggcagaactggaggagtttcaggaggaggagcctagagaggaggagggg
ccagaggccaagaagagacgtagcgacagacaggagggagaggcattgatccagtcattt
ctagagaaggtcaaatctctgccagctgccacaatgaccgaccaggaggtgaaggagaag
cttaaagccatgaaggaggaacttcttgcccataacaacgcttacatcacagatctcctg
gcaagctccaccccgatcccctcaacctaa
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