Esox lucius (northern pike): 105010158
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Entry
105010158 CDS
T04894
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
els
Esox lucius (northern pike)
Brite
KEGG Orthology (KO) [BR:
els00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
els03021
]
105010158 (setx)
Enzymes [BR:
els01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105010158 (setx)
5.6.2.5 RNA 5'-3' helicase
105010158 (setx)
Transcription machinery [BR:
els03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105010158 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
UvrD-helicase
Viral_helicase1
AAA_22
ResIII
nSTAND3
SLFN-g3_helicase
AAA_16
NAT10_TcmA_helicase
UvrD_C_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
105010158
NCBI-ProteinID:
XP_028980737
LinkDB
All DBs
Position
LG14:complement(9436157..9494928)
Genome browser
AA seq
2406 aa
AA seq
DB search
MSTCHWCLSVNGGVAELLQEYCAGSLSAEVEKEVSEDLKFCSDCVEAYHREKENVPGLHG
RLWKLETSRLLRAFSEAEKGALSDNDLICVDEDGCEAGVPDLNPAQYAYDLTVPMFEVLK
YPYLLAHHELSEMCVRAICKMAEYDSFVVTDKYAGIYLLLVHPNETVRRWAIEAAKSLGK
VDRDDFYDFQDIFSCMFYIVELGIPQNLADMDMPYNPMTKMTWLPPHLYDSSNAKNYWLG
ICMLLTQLDAQAMDSLFLGPDKQANILNCILNTIEKDTDDEEMDPFWPVLRCFMVILDCL
GSRIWGQIEPSQAFQAITGSPSYIAAIERIKEQTRIPQIKTESVNDDDMVTCSQMVYNSS
TNVSQDKQSKSSRTTDSSVMYEEMNSLVNLMNSDMGLPFSVKDSTFLWFIPFVKSVMDLD
DRSVIYIGEVVHFLCGGISTDPLNRNVCISDKVAEFFALILIHIIELHKESDRMNMLYYC
APKWVGVLVKCATLPVEAFVHTSEGSASHSVSSTSSRVRAPRKVSTSRTVPQACIKIIRS
LLKEGSRINPNSKCNEFLNLVNKQLREGPQKEWKLNRSEIQDLQSCLKNYVKMIVNRPTT
NAPPPEPLKIVGPKPTTTPPLQSSDEDSGSSGIAELKHTLKHEAPWDCNEGLTSDLRDSN
GVWTGRDLKEEKETEGFVELNNDSRPTRAIVSSLKTSQCKIQEIKSRLGSLMTKKSNSER
DGPGTTFAQDKPQSVLSSGRDEVEMPADPSCAQEESFDNEELDDLPLSILRTTFIRNKVS
KSGIRHTEHIDQSPPQSPSGIIVISDEDDDAVQTGLCFSDTSKIKDEHEPIDASGQNHSP
LRDYDGDMSESQVFEFETLEDMASAWSDQGSGSKIISERTQKDSPVRPTVLTVSTTSGVL
DTQPVSDDDIERACQQVEELEKLKTPTQECKRGIVKKRDLLVDAKPLRSKCLSEKSKLVK
KQAKEGLPALRKSNSKLCLNRLETKMPSSLTTSLTSAISHKTSIPAIVPPKKVRKAIVPA
STAERLGLKKKERKAFDLSQRTLDSLDELRRYGASVNVPQTKKSTRQTKRSKVTSPQKRV
VSVSNKKLLASQECQFFRQSKQASRGRTSANVPKKRDPINSEENLRPSFVTAEEDEDEDL
PCSQPDPVSPVETLNATCSLQKKDPQADSTPASSVSSSMNSFVSPYFQSNYEVTPGPSDQ
DTRKEEKGAGDDDEDSDWMHLTQMEPTDMEICSQMEGENFFHPQPDPVDLDSDKQVPFQE
IAGLSDWTRPVQATDNGPETPLVPQSFKKPTTSPPSVTRLDQEDDRLFLKPGMSPISLKK
AKPSTTKIYATSKSRNASLAQEMENTAKAKCLSASTPAGRGRPARSVGCAQNVPEPSQTI
FRKPFPPKERLYRPIASQKPPPKPIPPPQQPPPRPPQNVPHPPGQPILPIQHCNIGSTPQ
PSTSKTCPRPDALVHRQIPNQDVGFRYDPNYLIQGILSWTFDMFSNYKQFGLPSEICELP
LETIGLNFNSYDEYYNTFYPVLLTNAFEELAGEWLENKESGKVVSHDLKVVANDKCNNFW
NVSFTASITSIEECCQLYPKEEDLVILWLPQNRSSYLWPGHSIFDHQEHFGYVQRSSVFN
QTAGQSPTLNLTIRILGNVSLVNQQMVRCDVVGSLVSTMREFKAICRLRNCSMRRPLLSP
QAPFFQSGPEVIPSLPGYNSDQVRAVKTAMSIIRNRLNNPKICLIHGPPGTGKSKTIVGL
LQNLFHEGVNMQAKSRQMRVLVCAPSNAAIDSLMKKIIVVFKEKCKNVQGNCGYINLVRL
GNDRTISESMKPFSLDNQVKSRIEKYQAGHHKDVHRHGLQLDEEIDRISNLLPKLKKKDR
EFEEMAAQKSKLLKERQALSSELRKTRSAKQVTQTQVLIDAHVICCTLSTSGSSLLESAF
RRLGHEPFGCVIVDEAGQATETENLIPMLYRCNALVLVGDPNQLPPTVISQRAKELNYGQ
SLMARLVTVLDNSSKDNNIPSPVIFLSNQYRMHPDICRFPSKHVYHNALKTDNETAERRV
NLSWPFQPYQVFDVTDGQEVKERDSFSNPKEIQLVRFLLDLIAVKQQVRVGVITPYKAQK
DRINREVAKLNLVPLGPRVEVDTVDGFQGREMDCIIVSCVRASHEQGNIGFLGNRQRLNV
TITRAKCSLFILGHLRTLRENNEWGALIKDAATRDVIIQTNEMTFKADAMKIFKQDRPRS
LSHLSREPVPPRPAAGSCRAAPPSMRRSTHPAPVFHARDNASQWRPSSLSPPQATETRDP
RLMVQHPQAPQPRPEWDSRAEVRRDPRLERLRDPQFERDPRGRSSPEQYPQAGYQDNRRW
ADRERRHSPASTSYPRDRVGRPPRDPRQTDSYRYGATASSNHHTHTQKRPTDQQWIPPTD
AKRAKR
NT seq
7221 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctgccattggtgcctatcggtgaatggcggtgttgcagagctgctccaggag
tactgtgccgggtccctgtcagcggaggttgaaaaggaagtcagtgaggacctcaagttc
tgttcggattgtgtggaggcataccacagggaaaaggaaaacgtacctggactgcacggg
aggctatggaagttagagacctcaaggcttttgagagccttctctgaggcagaaaagggt
gcactgtcagataatgaccttatctgtgtggatgaagacggctgtgaggctggtgtgcct
gatctcaatcctgcccagtatgcatacgatctgacggttcccatgtttgaggtcctcaaa
tacccctacctcctcgcacaccacgaattaagtgaaatgtgtgttcgggctatttgtaag
atggcggaatatgactcctttgtggtgactgacaaatatgcagggatttatctcctgctt
gttcaccctaatgagacggtaaggcggtgggcaattgaagctgccaagtctttagggaag
gtggaccgagatgacttttatgattttcaggacatcttctcctgtatgttctacattgtt
gaactgggaatcccccagaacttggcagacatggatatgccctataatcccatgaccaag
atgacatggctgccaccgcacctttacgattccagtaatgccaaaaactactggctgggt
atctgtatgctcctcactcagcttgatgcccaggctatggactccctgttccttggaccg
gacaaacaagccaacatactaaactgcattctgaacaccatagagaaagacacagatgac
gaagagatggatcccttttggccagtcttacggtgtttcatggtgatcttggattgtttg
ggctccagaatctggggtcagattgaaccatcccaagccttccaggccatcacaggaagt
ccgtcctacattgcagcgattgagagaatcaaagagcaaaccaggataccacagattaaa
accgaatctgtgaatgatgacgacatggtgacctgcagtcagatggtttacaacagtagc
accaacgtcagccaggacaagcaaagcaaaagttcacgtactacagatagcagtgtcatg
tatgaagaaatgaattctctggtcaacctcatgaattcagatatgggcctgccattctct
gtgaaagacagcacattcctctggttcatcccctttgtgaaatccgttatggatctcgat
gaccgcagtgtcatctacattggtgaggttgtccacttcctgtgtggggggatcagcaca
gatcccctgaatcgcaatgtttgcatatctgacaaggtcgcggagttcttcgccctcata
ctcatccatatcattgagttgcacaaggagagcgaccgcatgaatatgctctattactgt
gctcccaagtgggtgggtgttttggtgaaatgtgccacattgcctgttgaggcttttgtc
cacacctctgaaggttcagcctctcactccgtgtcttccacatcctcaagagttagggca
ccccgaaaggtgtctaccagtaggactgtcccacaggcatgcataaaaatcatccggtct
ctgctcaaggaaggaagtaggatcaaccccaacagcaagtgcaacgagttcctgaatctt
gtgaacaagcagctcagggaaggtccccagaaggagtggaagcttaataggtctgagatt
caggatctacagagctgtcttaagaactatgtcaagatgatagttaacaggccaaccacg
aatgctcctccacctgaacctctaaagattgtggggcctaaaccaacaactacaccacca
cttcagtcaagtgatgaagactcaggatctagtggcatagcagaattgaaacatactttg
aaacatgaagctccctgggattgcaatgaaggtttaacttcagatcttagggattccaat
ggagtatggacaggaagggacctgaaagaggagaaagaaacagaggggtttgttgagcta
aacaatgattcaagaccaactcgagcaattgtatcttccttaaagacaagtcagtgtaaa
atccaggagattaaatccagacttggctcactaatgaccaagaagtctaactctgagaga
gatgggcctggtactacatttgctcaagataaacctcaaagtgttttgagcagtggtaga
gatgaggttgaaatgcctgcagacccttcatgcgctcaagaagaatcttttgacaatgag
gagctggatgatttgcccctttctattttaagaactacatttataagaaacaaagtttcc
aaatctggtataaggcacacagaacacattgaccaatcaccaccacagtctccctctggc
attattgttatatctgatgaggacgatgatgctgttcaaacaggattgtgtttttctgat
acttccaaaataaaagatgaacatgaacctattgatgcctctggccagaatcacagtccc
ttgcgtgattatgatggagatatgagtgaatctcaggtgtttgagtttgaaacactggag
gatatggcttctgcctggtctgaccaaggttcaggaagtaaaattatttctgaaagaacc
caaaaagacagccctgtcagacctaccgttttaacagtaagtacaacttcaggagtgctt
gatacccaaccagtctctgatgatgatattgaacgagcctgtcagcaggttgaggagctt
gagaagctcaagaccccaactcaagagtgcaaacgtggcattgtcaaaaaaagagatctt
cttgttgatgcaaaaccactgcgctcaaagtgcctgagcgaaaagtctaaacttgtgaaa
aaacaagccaaagagggcttacccgctttgagaaaaagtaattcaaagttatgtttaaat
agactggaaaccaagatgccatcttccttaaccacatcattgacatcagccatctcacac
aaaacatctattccggccattgtccctcctaaaaaagtcagaaaagccatagtgcctgca
tcaacagcagagaggcttggcttaaaaaaaaaggagagaaaagcctttgatctctcccag
cgaacgcttgactctcttgatgaactgaggcgctatggtgcttcggtcaatgtcccacag
accaagaagtctaccagacagaccaagaggtcaaaggtaacctcacctcaaaagagagtt
gtcagtgtgagtaacaagaagctcctagcctcccaggaatgccagtttttcagacagagc
aagcaggcatccagaggaagaacctctgcgaatgttcctaaaaagagagatcctataaac
agtgaggagaatttgaggcccagttttgttacagcagaggaggatgaagatgaggacctg
ccatgttcccagccagatccggttagcccggtagagacgctgaatgccacttgcagcctg
caaaaaaaagacccacaagcggactctactccagcaagtagtgtgtcatctagcatgaac
agctttgtgtctccatactttcagagtaattatgaagtcacacctggaccttctgatcag
gacactagaaaggaggaaaaaggtgctggtgatgatgatgaggattcagactggatgcac
cttacccaaatggaaccaacggacatggagatttgctcacagatggagggggaaaacttc
ttccacccacagccggaccctgtagacctggactcagataagcaggtgccctttcaggaa
atagcagggctttcagactggacacgtcctgtacaggcaacagacaacgggccagaaact
ccactagtcccacagagttttaagaaacctactacatcgccaccctcagtcaccaggttg
gatcaggaggatgatcgcttgttcctgaaaccgggaatgtctcctatatcgcttaaaaag
gccaagccctccaccaccaagatctatgcaacctcaaaatcgaggaatgcctccttggcc
caagagatggagaacactgcaaaggcaaaatgtttgtctgcttccactcctgctggaaga
ggcaggcctgctcgctcagttgggtgtgcacaaaatgtacccgaaccatctcagacaatt
ttccgtaagcccttcccacccaaagaacgtttatatagaccgattgcctcccaaaaacca
ccacctaaacccattccaccaccacaacaaccaccccccagacccccacaaaacgtaccc
catccacctggccagcccatcctccctatccagcactgcaacatcggttccaccccccaa
ccctccacctctaagacttgccccaggcctgatgcacttgtccatagacagatacccaac
caagatgttggcttcagatatgatcccaactacctgattcaaggcattctgagttggacc
tttgatatgttcagcaactacaagcagtttggtttgccctctgagatatgcgagttaccg
ctggaaaccataggcctcaacttcaactcctacgatgaatactacaatacgttttacccc
gtacttctcaccaacgcttttgaggagcttgcaggtgaatggcttgagaacaaggaatca
ggaaaagtggtgtctcacgatttgaaggttgtagcgaatgacaaatgcaacaatttttgg
aatgtcagctttacagcaagcattacttccattgaagaatgctgtcagctgtacccaaag
gaggaagacctggttatcctttggctgccccagaatagaagttcttacttgtggccagga
cacagcatctttgatcaccaggaacattttggctatgtgcagagatccagtgtctttaac
caaactgctggccagtcccccactctaaacctgactatcaggattctggggaacgtctca
ttggttaatcagcagatggtgcgttgtgatgtggtgggctccctggtcagcaccatgagg
gagttcaaggccatctgtaggctcagaaattgctccatgcgccgacccctgctcagcccc
caggcccccttcttccagtctgggccggaggtcatccccagtctgcccggttataattct
gaccaggtgagagcagtgaaaactgctatgtccatcattaggaatcggctaaataacccc
aaaatctgcctgatacatggacccccaggaacagggaaaagcaaaaccattgttggtctg
ctgcaaaatctgttccatgagggagtaaacatgcaagctaaaagccgccaaatgcgagtc
ctggtgtgcgccccatccaatgccgccattgacagtctgatgaagaaaatcatcgtcgtc
ttcaaggagaaatgcaagaacgtccagggtaactgtggatacatcaatctagtaaggctc
gggaatgacaggaccatctccgaaagtatgaaaccattcagcctggacaatcaggtgaaa
tcgcgaatagaaaaataccaggcgggacaccacaaggatgtccaccgacatgggctacag
ctggatgaggaaatcgacaggatctccaatttgctgcccaaactgaagaagaaagacaga
gagttcgaagagatggcggcgcaaaagtctaaactgctcaaagagagacaggcgctcagc
tctgagctcagaaagactcgcagtgcaaagcaggtgacccagacccaggtgctgatagat
gcccatgtgatctgctgcacgttgagcaccagtggcagctccctcctggaatcggccttc
cggcgcctgggacatgagcccttcggctgcgtcatcgtggacgaggcagggcaggccaca
gagactgagaacctcatccccatgctctatcgctgtaacgcccttgtcctggtgggagac
cccaatcagctgccccctactgtcatttcccagagggcgaaggagttgaattatggccag
tccctcatggctcggctggtgacggttctggacaactcctctaaggataacaacataccc
agcccagtgatctttctcagtaaccagtaccgcatgcaccctgacatctgcaggttcccc
tccaagcacgtctaccacaacgccctcaaaaccgacaatgagaccgcagagagacgggtt
aacttgagctggccctttcagccctaccaggtgtttgacgtgaccgatgggcaggaggtc
aaggagagagattcatttagcaacccgaaggagatacagctggtgaggttcctgctggat
ttgatagcggtgaagcagcaggtcagagtgggggtcatcacaccctacaaagcccagaag
gaccgtatcaaccgtgaggttgccaaactgaaccttgttccactgggtcccagagtggag
gtggacacggtggatgggttccagggtcgagagatggactgcatcattgtctcctgtgtc
agggccagccacgagcagggcaacatcggattcctggggaaccgccagaggctgaatgtg
accatcacccgggccaagtgtagcctgttcatactgggccatttaaggacgctccgggaa
aacaatgagtggggtgcgctgatcaaggacgctgctacccgggacgtcatcatacaaacc
aatgagatgaccttcaaggcggatgccatgaagatcttcaagcaggaccggcccaggagc
ctgtctcacctctccagagagccagtccccccccggcccgctgctgggtcctgccgggct
gctcccccctcgatgcgacgctccactcacccagccccggtcttccacgccagggacaat
gcctcgcagtggcgccccagctccttatctcctcctcaagccaccgaaaccagagatccc
cgtctgatggtccagcatccacaagcccctcagcccagaccagaatgggactcacgagca
gaggtcagaagagatccacggctggaacgcctcagagaccctcaatttgagagggaccca
cgaggacggagcagcccagagcagtatcctcaggctgggtaccaagataaccggcgatgg
gctgacagggagagacgccattcacctgcttctacgtcttaccccagagacagagttggc
aggccaccgagggaccccagacagacagactcttatcgatacggtgctacagcctcctcc
aaccaccacacacacactcagaaacgacccacagaccaacaatggatccctcccactgac
gccaagagggccaagagatga
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integrated database retrieval system
