Esox lucius (northern pike): 105010849
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Entry
105010849 CDS
T04894
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
els
Esox lucius (northern pike)
Pathway
els03015
mRNA surveillance pathway
els04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105010849 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
105010849 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
els03021
]
105010849 (sympk)
03019 Messenger RNA biogenesis [BR:
els03019
]
105010849 (sympk)
Transcription machinery [BR:
els03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105010849 (sympk)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105010849 (sympk)
U7-dependent histone pre-mRNA processing factors
105010849 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
HEAT_MROH2B_C
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
105010849
NCBI-ProteinID:
XP_010868802
LinkDB
All DBs
Position
LG07:complement(39555947..39564639)
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AA seq
1260 aa
AA seq
DB search
MTSNNGESAGARTCVASQFFKDDKAIDMTTSEKVVDLLNQAALIATDSKLTVLKQVQELI
INKDPSLLDNFLDEIIAFQTDKSMEVRKFVIGFIEEACKRDNELLLRLIANLNMLLKDES
VNVVKKAILTFTQLYKVALQWFVRSKVMSEMQEACWDMVTQMKEDILAMLDIDNDGVRTH
AIKFTESLIITLSPRTSDSDTPKRQEGDISLDKIPKDHPYIRYDTLCEEGKSALEQLLKF
MVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLK
LHLLAVLKHPCSLEFQGQISTLLLDLGMSQNEIARNTPAPREQRKRPRIEPYSDGKKLKM
EPVLLEDDDDKEEPVAPSVSKPSSVPAAQSAIDLTAEFLRPLLSPENVANLVLISMVYLP
DVMPASFQATYTPVESAGTDAQIKHLARLMATQMTAAEIGPGLEQCKARDEEAGKDEALD
DSLGETSKDLLIKRKVPVVGQAISVVGGGYTEKSQLETPQVKRLPEPILPSTQIKMPGAS
GKRKVFRLADVVQPFTDAQLEKMTNTAVKRILHSEKAIAQSGMSHVRVKLLSRLVCQFEG
IMMDDVLEFILEDIRTRIDLAFSLLYQEYNTYLSQQPAGLLDAYDHCLFTLLAGLQEKPE
QRDGLFTKLVLEAPLITESALDVIRRYCEDESRVYLGMTTLKELIIKRPSRQFQYLHVLL
DLSSHEKEKVRSNALSFIKRMYEKDQLRDYIEKFALNYMQLLVHPNPPSLLFSADKDTEV
ASPWTEETVRQCLYLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRVIEQPIRGMGMNS
PDLLLLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGL
EKKEVIQALPKLIKLNPVVVKEVFNRLLGTQHSEGSSSMSPLTPGELLVALHNVDSTKCD
MKSIIKATNLCFGERNVYTSEVLAVVMQQLMEHSPLPILLMRTVIQSLTMYPRLGGFVMN
ILSRLIVKQVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTSVFERCPEMREPLLQH
VHSFTPHQQAHITASVMTVLEANSKQPEPEAMRPVMAERKVETPPAAIAPPATSAPAAIM
APVVTAPVQAEPLPVPLKEPELPVQQAVPTRKEEEEPMDEGETAPAGQEDTADTVLQVDL
PVVEENSTQDSEEKMEEPVEEPMEETSTEPADVTDQLKDSIAEPETDRTTEPETGAGDAE
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaaataatggagaaagtgctggagcaaggacttgtgttgcatctcagtttttc
aaagatgataaagcaattgatatgaccaccagcgaaaaggttgtcgatctcctgaaccaa
gccgctcttattgctacagacagcaaactcacagttctcaaacaggtccaggagcttatc
atcaacaaggacccctctttacttgacaatttcttagatgagatcatagcctttcagact
gataaatcaatggaagtaagaaagtttgtcatcggtttcattgaggaagcatgtaagaga
gacaacgagctcctgctacgactgattgccaaccttaacatgctgctgaaggatgaaagt
gtcaatgtagtgaagaaggccattctcacattcactcagctctacaaagttgcattgcag
tggtttgtgcgttctaaggttatgtcagaaatgcaggaagcatgctgggacatggtgact
cagatgaaggaggacattctggccatgctggacattgacaacgatggagtccgcactcat
gctataaagttcactgagtctctcatcatcactctgtcaccgaggacttcagactcagac
actcccaagcgccaagagggagacattagcctggataaaatacctaaagaccatccctac
atccgctatgataccctatgtgaggagggaaaatctgcactggagcaacttctcaagttc
atggtccaccctgctatctccagcatcaacctgaccacggccctcggttccctagccacg
ctggcacgacagaggcccatgtttatgtctgaggtggtgcaggcttacgagactctgcat
gccaacctacccccaaccctggccaaatctcaagtgagcagtgtacgcaagaatctcaag
ctgcacttactggcggtgctaaagcacccgtgcagcctggagtttcagggtcaaataagc
actctcctcctggacctggggatgtcccagaatgaaatagcccgcaacacgccagcccct
cgcgaacagcgcaaaaggccccgcattgagccctactcagatggcaaaaagctcaagatg
gagcccgttcttctagaagatgatgacgataaagaagagccagtcgccccttctgtttcc
aagccctcctctgtgccagcggcgcagtcagccatcgacctcacagccgagttcctgcgc
cccctgctctctccggagaacgtggccaatttggtgctgatcagcatggtgtacttgcct
gatgtcatgccagcgtccttccaggccacatacacgccggtggagtcggcaggaaccgac
gcccagatcaaacacttggccagactcatggccactcagatgaccgcggcggagattgga
ccaggactggagcagtgcaaagcacgagatgaggaagctgggaaggatgaggccttggac
gacagcttaggggaaacctccaaagacctgctcatcaagcgtaaagtgccagttgtgggt
caggccatctctgtggtcggaggaggctacacagagaagagccaattggaaaccccccaa
gtcaagaggcttcccgagcccattctcccctccacacagatcaaaatgcccggtgcgagt
gggaagaggaaagtgttcaggctggctgatgtggtccagcccttcacagacgcccagctg
gagaagatgaccaacacagctgtcaagcgcatcctgcactctgaaaaggctatagcacag
agcgggatgtcccacgtgcgtgtcaagctgctctccaggctcgtatgccagttcgagggg
ataatgatggacgacgtgctggagttcatcctggaggacatccggacgaggatcgacctg
gccttctccctcctctaccaggagtacaacacgtacctcagtcagcaaccggcgggtctg
ttggacgcctacgaccactgcctgttcacgctgctggccggcctgcaggagaagcccgag
cagagggacgggcttttcactaagcttgtgctggaggctcccttgattacagagtctgct
ttggatgtcatacgacggtactgtgaagatgagtcgcgtgtgtaccttggcatgaccact
ctgaaggagctgattataaaacgcccctcaagacagttccagtacctccatgttcttctg
gacctaagctcacatgagaaggagaaggtgcgctccaatgccctgtctttcataaaacgg
atgtatgagaaggaccagctgagggactacatcgagaagtttgccctgaactacatgcag
ctgctcgttcaccccaaccctccgtccttactcttcagtgccgataaggacacagaggtg
gcttccccctggacggaggagacagtgaggcagtgcctgtacctctacctctccctcctg
cctctcaaccaccgcctggttcacgagctggcgtctgtttacacagaggccatcgctgac
attaagcgcagtgtgcttcgggtgatagagcagccaatccgtggaatggggatgaactct
cctgatctgctgctgctggttgaaaactgtcctaaaggagcagagactctagtcacccga
tgccttcacattctcactgataaagtgccgccgtcaccagagctggtggagagagtgagg
gacctttatcacaaacgagtgccagacgttcgtttcctaattcctgtcataaacggtctg
gaaaagaaagaggtgattcaggctcttcccaagcttatcaagttgaaccctgtggtggtg
aaggaagtcttcaaccgtctcctcggcactcagcacagcgagggcagctcctccatgtct
cccctcaccccgggcgagctcctcgtggccttacacaacgttgactcaaccaagtgtgac
atgaagtccatcataaaagccaccaacctgtgttttggagagaggaatgtgtacacgtca
gaggtcctggctgtggtgatgcagcagctgatggagcacagccccctacccatcctcctg
atgagaaccgtcatccagtccctcaccatgtatccacgcctgggcggcttcgtcatgaac
atcctgtcccggctcattgtcaagcaggtgtggaagtatccaaaggtgtgggagggcttt
gtgaagtgctgccagaggaccaagcctcagtcgtacagcgtcctcctgcagctcccccca
gcccagctgaccagcgtgtttgagcgctgcccagagatgagggagcccctcctacagcac
gtgcactccttcaccccccaccagcaagcgcacattacggcctccgtcatgaccgtcctg
gaggccaacagcaagcagccggagccagaggccatgcgccctgtgatggcagagaggaag
gttgagacccccccagcagccattgcgcccccggccaccagtgcaccagctgcaatcatg
gcgcccgtcgtaactgctccggtacaagcagaacctcttccggtacctctgaaagaacca
gagctaccagtccagcaggctgtgccgactagaaaagaggaagaggaacccatggacgaa
ggagaaacagcccccgctggtcaagaggatactgcagatacagttttgcaggtggatttg
ccagtagtggaagagaactcaactcaggattctgaagagaaaatggaggaaccagtggag
gaaccaatggaggagacatctactgaaccagcagatgtcactgaccaattaaaagacagt
attgcagaacctgagactgacagaaccacagaacctgagactggcgcaggagatgcagaa
tga
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integrated database retrieval system
