Esox lucius (northern pike): 105011230
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Entry
105011230 CDS
T04894
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
els
Esox lucius (northern pike)
Pathway
els03440
Homologous recombination
els03450
Non-homologous end-joining
els04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105011230
03450 Non-homologous end-joining
105011230
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
105011230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
els03032
]
105011230
03400 DNA repair and recombination proteins [BR:
els03400
]
105011230
DNA replication proteins [BR:
els03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
105011230
DNA repair and recombination proteins [BR:
els03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
105011230
BRCA1-C complex
105011230
NHEJ (non-homologous end-joining)
MRX complex
105011230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
AAA_21
AAA_15
SbcC_Walker_B
Hydro_N_hd
ABC_tran
AAA_29
AAA_13
zf-met
Motif
Other DBs
NCBI-GeneID:
105011230
NCBI-ProteinID:
XP_010869396
UniProt:
A0A6Q2Y7F7
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Position
LG07:6033317..6058779
Genome browser
AA seq
1314 aa
AA seq
DB search
MARIEKMSILGVRSFGVEDKDKQIISFFNPLTVLXGPNGAGKTTIIECLKYVTAGEFPPG
XQGNTFVHDPKDAHETEVRAQIRLQFTDLNGEKVAVQRSMXVHQKGKKTPEFKTLEGVIT
RIKYGEKVSLSSKCAELDREMISALGVSKAVLDHVIFCHQEESNWPLXEGKALKTKFDAI
FSATRYIKVLETLRQLRLKQSNQVRECQVELKFLKLNKEKAKEIRDLLSTKETQLASSKE
TVQKIDGQIEPLENRLADIDDNLGKVMKLDNEIKALDSRKRQMEEDNQELEEKMEQVFQG
SDEQLQEIYQNHQRTVKEKERKLTDSQRDVERAARECQRLTRLKSDLLVEQGRLQLESDQ
HTQNIKARDSQVRALAAYLEMEGYDRTPFNDRQLQSFHLQVQERLDQETEAAEQVMRDMQ
EKEALKQRSIDEIRDKKTSLESTMELKKDLQNKKQQELKNVRSGLQRLEGSSTRLQELEM
ELTNAERELESAVESSNVDGLKAEVLELQKSKAELERKLRQLDQEMETXNTHTSVRTQMD
MLKKDKTDKEEQVRKIKSRHNEDLVSLLGHFPNKKELEDWIHAKSKEIKSTREKLAKINK
ELASGSXNKRHCSVEIRRKEQQLAGYEEKVFNVCGSQDFQQDLGKLQEDLEKTSKQRAML
AGATAVYTQFISQLTDEGEPCCPVCQRVFPSEAELQDVISDMQSKLRLVPDKLKNTEQDL
KKKERRKDEMMALKPIRQSIVELKEKELPELRNRLQNVNRDIERLKGDVEEQETLLSTQM
SEEDTAKACLQDISLMDRYQMDLRDVERKIAQQAAKLQGVDLSRTIQQVSQEKQETQHCL
DTTSSKMEMKRKMIQDQQDQIQTLKSSVNEIRGEKLQISSDMQKQQQLEQQCVEMTAEIQ
TLHRDLREAKEQMAPLSATLEKLQQERNDLISRRKQKQQEGQEKINGIKDKKKNMDTLER
VITKYTGEGKDDYKEQKEAELQELNTQLHEAEKNKEKINKDIGNIRQDIDTQKVQERWLQ
DNLTLRKRIEELKEVIRKHESLMKEMGNMQVLQLRNERRESERRMEDLKKNRSVALGRQK
GFEEEIIRFRKELREDQYGKADERFRDKMIVMRTTELANKDLDIYYKALDQTIMKFHSMK
MEEINKIIRDLWRSTYRGQDIEYVEIRSDVDESASGAGVKRRNYNYRVVMVKGDTALDMR
GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAYALVEIIKSRSR
QRNFQLLIITHDEDFVELLGRSSYVEHFYRIRKNVDQCSEITKCSISSLSTYLH
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggccaggattgagaagatgagcatcctcggagtgaggagctttggcgtggaagacaaa
gacaaacagatcatttcattctttaatcccttgacggtgttangtggacccaacggtgca
ggtaaaacgactatcattgagtgtctgaagtacgtaacggctggggaatttccaccaggg
nagcaaggaaatacatttgttcatgatccaaaggatgctcatgagacggaggtgcgcgct
caaatccgactgcagttcactgacctcaacggggagaaggttgcagttcaaaggtcaatg
ncagtccaccagaagggcaagaagacaccggagttcaaaactttggagggggtcatcacc
aggatcaaatatggagagaaggtcagtctgagttccaagtgtgcagagctggacagagag
atgatctcagcattgggtgtgtccaaagctgtccttgaccacgtcatcttctgtcaccaa
gaggagtccaactggcccctgngggaagggaaggccctcaagacaaaatttgatgccatc
ttctccgctacaagatacatcaaggtgctggagaccctgaggcagctcaggctgaaacag
tccaaccaggtaagggagtgccaggtggagctgaagttcctgaagctgaacaaggagaag
gccaaggagatcagggatctgctctccaccaaggagacccagctggcctcctccaaggag
accgttcagaagatagacggccagattgagcccctggagaaccgactggctgacattgac
gataacctggggaaagtgatgaagctcgacaatgaaatcaaagccttagacagcaggaag
aggcagatggaagaagacaaccaggaactggaggagaagatggagcaggttttccagggc
tctgatgagcaactgcaggagatttaccagaaccaccagaggacagtgaaggagaaggag
aggaagctcacagacagccaaagggatgtggagcgggccgcgagagagtgccagagactg
acccgcctcaagtcggaccttctagtggaacaaggccgcctccagctggagtccgaccaa
cacacccagaacattaaggcccgcgactcccaagtcagagccctggcagcctatctggag
atggagggctacgaccggacacccttcaatgaccggcagctccagagcttccacctccag
gtccaagaaagacttgaccaggagactgaggccgccgagcaagtcatgagggacatgcaa
gagaaggaggccttgaagcagcgcagcattgacgagatccgagacaagaagaccagcctg
gagagtaccatggagctgaagaaggacctgcagaacaagaagcagcaggagctgaaaaac
gtcaggtctggccttcagagactggagggctcctcaacccggctacaggagctggagatg
gagctcaccaatgcggagcgggagctggaaagcgctgtggaaagctccaatgtggacggg
ctgaaggcggaagtgctggagctccagaagagcaaggcagagctggaacgcaaactgcgt
cagctggaccaggagatggagaccnctaacacacacacctccgttcgcacacagatggac
atgctcaaaaaggataagacggataaagaagaacaggtgaggaagatcaagtcgaggcac
aacgaggatctggtgtctctgctcggtcacttcccgaacaaaaaggagctagaggactgg
atccatgccaagtcaaaagagatcaaatccacccgggagaaactggccaagatcaataaa
gaactggcatccgggagcnnaaataagaggcactgctctgtagagatcaggaggaaggag
cagcagctggccggctacgaggagaaggtgttcaacgtctgtggcagtcaggacttccag
caggacctgggcaagctgcaggaggacctggagaagacctccaagcaaagagccatgttg
gcgggcgccacggcagtgtacacgcagttcattagtcagcttacggatgagggcgagccc
tgctgccccgtctgccagcgagtgttcccctcggaggctgagctccaggatgtcatcagc
gacatgcagtccaagctgcgcctggtcccggacaagctgaagaacaccgagcaggacctg
aagaagaaggagaggagaaaggatgagatgatggctctcaagccgatcaggcagtctatt
gtggagctgaaggagaaggagcttcctgagctgaggaaccggctgcagaatgtcaaccgg
gacattgagaggctcaaaggagatgtggaggagcaggagaccctgctgtccactcagatg
tcagaggaggacacagccaaggcctgcctgcaggacatctccctcatggacagataccag
atggacctgagggatgtggagaggaagattgcccagcaggctgccaaactccaaggtgtg
gatctgagccgcaccatccagcaggtcagccaggagaaacaggagacccagcattgcctg
gacacaacatccagcaagatggagatgaagcgtaagatgatccaggaccagcaggatcag
atccagaccctgaagagcagcgtaaacgagatccggggcgagaagctgcagatctccagc
gacatgcagaagcagcagcaactggagcagcagtgtgtggagatgacggcagagatccag
actctgcaccgggacctcagggaagccaaggagcagatggcccccctgtccgccaccctg
gagaagctgcagcaggagaggaatgacctaatatcgcgcaggaagcagaaacagcaggag
ggccaggagaagataaatggcatcaaagacaaaaagaaaaacatggacaccctagaaagg
gtgatcaccaaatacacaggagagggcaaggatgactacaaggagcaaaaagaggcagag
ctccaagagctcaatactcagctccatgaggccgagaagaacaaggagaagattaacaaa
gacatcggaaacattcggcaggacatagatactcagaaggtccaagaacgttggctgcag
gacaatctgacgttgaggaagcgcatcgaggagctgaaggaagtgatcaggaaacatgag
tctctgatgaaggaaatggggaacatgcaggtcctgcagctacgcaatgagcgccgggag
tctgagcgccgcatggaggacctgaagaagaaccgcagcgtggccctgggccgacagaag
ggcttcgaggaggagatcatccgcttccggaaggagctccgagaggaccagtacggcaag
gcggacgagcgcttccgggacaagatgattgtaatgaggaccaccgagctggcaaacaag
gacttggacatctactacaaggccctggatcaaaccataatgaagtttcacagcatgaag
atggaggagatcaacaaaataattcgagacctgtggcgcagcacgtacagaggacaagac
attgagtatgtggagatccgttctgacgtggacgagagtgcctcgggggccggggtgaag
cggaggaactacaactaccgtgtggtcatggtgaagggggacaccgcgctggacatgagg
gggcgctgcagtgccggccagaaggtcctggcgtcactcatcatccgtttggctctggct
gagaccttctgccttaactgtggcatcctggccctggatgagcccaccaccaatctggac
cgagagaacattgagtccctcgcctatgcccttgtggaaatcatcaagagccgctcacgc
cagcgcaacttccagctgctcatcatcacccatgacgaggactttgtggagctcctggga
cgctccagctacgtggaacacttctaccgtatcaggaagaacgtggatcagtgctcggag
atcaccaagtgcagcatatcttccctcagcacctacctgcactga
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integrated database retrieval system
