KEGG   Esox lucius (northern pike): 105012230
Entry
105012230         CDS       T04894                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
els  Esox lucius (northern pike)
Pathway
els03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:els00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    105012230 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:els03021]
    105012230 (taf5)
   03036 Chromosome and associated proteins [BR:els03036]
    105012230 (taf5)
Transcription machinery [BR:els03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     105012230 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     105012230 (taf5)
Chromosome and associated proteins [BR:els03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     105012230 (taf5)
    STAGA complex
     105012230 (taf5)
    TFTC complex
     105012230 (taf5)
    SAGA complex
     105012230 (taf5)
    SLIK complex
     105012230 (taf5)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_THOC3 TFIID_NTD2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_VPS8 Beta-prop_WDR36-Utp21_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st DSE1_N ANAPC4_WD40 Beta-prop_SCAP Beta-prop_TEP1_C PAC11 Beta-prop_Aladin Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_Vps41 CFAP251_N Beta-prop_EIPR1 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_DCAF12 ASA1 Beta-prop_NOL10_N Beta-prop_WDR19_1st Tricorn_2nd WD_LRWD1 Beta-prop_Nup120_160 PEP5_VPS11_N LisH_TPL Beta-prop_ELP1_1st LisH_PAC1 Beta-prop_ACSF4 PROPPIN RAB3GAP2_N VID27
Other DBs
NCBI-GeneID: 105012230
NCBI-ProteinID: XP_010871213
LinkDB
Position
LG09:complement(13348991..13354092)
AA seq 752 aa
MAAVQDGQVDLEVEKKEIKTETSNDGSGNNNANSSSPGSTSLGATSKSPTGPAEDQQTLL
AVLQFLKRNKLNESVDILRREAGLSVEIDDSPGSASGGAGSGGASNSTVDGGDANSLLSR
VSIAIPAAPAVTAAPVPPKVTASGGEDQPDVNVVLSAYSQQGDPDLYPLYYNGLKKFIES
VLDCHRAELSQVFYPLFVHMYLELVYNNHEVEAKQFFEKFSGDQECYYAEDLRILSGMTK
KEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPR
SKSQIDAMSGSLAGEAKRDANKTKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKK
DSMGSKSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEAAKKIRLGSDNLPSICFYTFL
NAYQGLTAVDITDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERI
MDEKTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYP
VWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRMFAGHLADVTCTRFHPNSNYVATGSA
DRTIRLWDVLNGNCVRILTGHKGPIHSLAFSPNGKFMASGATDGRVLLWDIGHGLMIGEL
KGHTDTIYALRFSRDGEILASGSMDDTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQE
LLLGSYTTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq 2259 nt   +upstreamnt  +downstreamnt
atggcggctgtgcaagatggacaggttgatctggaggtcgaaaaaaaagaaataaaaaca
gaaacttcaaatgatgggtctggaaataacaatgcaaactcttcgtcacctggttctacg
tctttaggtgctacatcaaaatcaccgacgggaccggcagaggatcaacagacacttctt
gcagtgctgcaatttctcaagaggaataaattgaatgagtcagtagacattctacggcga
gaagcgggcttatcggtcgaaatagatgattcccccggatccgcatcgggaggagctgga
tctggtggtgcctcaaattccacggtagatggaggggatgccaactctctcctcagtcga
gtttccatcgccatccctgctgcgcccgcggtcaccgctgcccccgttccaccaaaagtg
acagcatcgggtggggaggatcagccggacgtcaacgttgtcctgtcggcctatagccag
cagggagatcctgatctgtacccgctgtactacaacggcctgaagaagtttatcgagtct
gtcctggactgtcacagagccgagctgtcccaggtcttctacccgctgtttgtgcacatg
tacctagagctcgtctacaacaaccacgaggtggaggccaagcagttttttgaaaagttc
agcggggaccaggagtgttactatgcagaggacctgcgcatcctttcaggcatgaccaag
aaggaacacatgaagggcaacgagaccatgctggacttcaggaccagcaagtttgtcctg
cgtatctcccgagactcctaccagctgctgaagaggcatcttcaggaacgtcagaacaac
cagatctggaacatcatacaggaacacctctatattgacatctttgatggaatgccacga
agtaaaagtcagattgatgccatgtctggaagtctggcaggagaggccaagagggacgcc
aacaaaaccaaagtgttctacggcctactgaaggagcccgagatcgaagtgcccctggac
gatgaagatgaggaggctgaaaatgaggagggcaaacccaagaagaagaagcccaagaag
gacagcatgggttccaagagcaagaaacaggaccccaacgcaccacagcagaccagaatc
cctctcccagagctgaaggactccgacaagctggacaagatcatgaacatgaaggaggcc
gccaagaagattcgcctgggttcagataacctgccctccatctgcttctacaccttcctc
aacgcctaccagggcctgacggcggtagacatcacggacgactccagtctgatcgcgggg
ggcttcgccgactccaccgtgagggtgtggagcgtcactcctaagaaactacgccgggtc
aaatccgccgcagacctgagcaacatagataaagagtccgacgacgtgttggagaggatc
atggacgagaagacggcgagtgaatctaagatcctgtatggacacagcggaccagtttat
ggcatcagcttcagccctgacaggaactatctgctgtctagttctgaggacggtacagtg
agactatggagtctgcagacattcacctgccttgttgggtataaaggacacaactacccc
gtttgggacacccagttctccccttacggatactactttgtgtctgggggacacgacaga
gtggctcgtctgtgggctacagaccactaccagccccttcgaatgttcgccggccacctg
gctgacgtcacctgcacgcgcttccaccccaactccaactacgtggccaccggctcggcc
gaccgtaccatacgcctctgggacgtcctgaacggaaactgtgtccgcatcctcaccggt
cacaagggtcccatccattccctggccttctcccccaatgggaagttcatggcgtcgggc
gcaaccgacgggagggttctgctgtgggacatcggtcacggcctgatgattggcgagctg
aagggacacacggacaccatatacgccctcaggttcagcagggatggcgagatcctggcc
tcaggctccatggacgacacagtgaagctgtgggacaccctgaaggccttcgatgacgtg
gagttggacgacttcaccgcggcgacgggtcacatccatctaccggagaactcccaggag
ctgctgctgggctcctacaccaccaagtccacccccgtcatacacctgcacttcacacgc
aggaacctactgctggcagcgggggcctacaacccctga

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