Esox lucius (northern pike): 105012976
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Entry
105012976 CDS
T04894
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
els
Esox lucius (northern pike)
Pathway
els03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105012976 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
els03041
]
105012976 (ddx42)
Enzymes [BR:
els01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105012976 (ddx42)
Spliceosome [BR:
els03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105012976 (ddx42)
Complex B
105012976 (ddx42)
Complex C
U2 SnRNP specific factors
105012976 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Peptidase_M11
Motif
Other DBs
NCBI-GeneID:
105012976
NCBI-ProteinID:
XP_012991348
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All DBs
Position
LG11:26890928..26900931
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AA seq
935 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLGGGGGGKKEEPRLPPKSHTSFGAGTAGGYGKNQQLPAFY
KIGTKRANFDEENAYFEDDEEESNSNDLPYIPAENSPTRQQFQSGGGSDSEDDPLDAFMA
QVEDQAAKDMKKLEEKEKKCEKGIRDDIEEEDEQEAYFRYMAENPTAGLTAEDEDENIDY
DSDGNPIAPTTKKIIMPLAPMDHSEIDYPPFERNFYTEHEELHSLTGTEVLELRHKLNLR
VSGAAPPKPSTSFAHFGFDEQLMHIIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEIMPSGV
EKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLIEEGHSLGLLHGDMDQSERNKVIA
DFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TNKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGQGKRLNIGGGGLGYRE
RPGLGAESSDRGSSGSVMAHYEGYSKPTTGAMGDRMSAMKSAFQSQYKNHFVAASGTVPK
LNTKSSSSSGWTSAGSLSSIPTGAPEGPDRPRGPSVSMAPPAALSVGTKMAGFTRAGSLS
CVSDGQASVAQGYSAPAPPSPRDAPRDRHGDDRGRHAEGHHRDRSERSERHSGGERDRHM
DRDRYGDKDRHGGSGRHVDSRNGDGSRRDREREDWRGDREGGDRAEGRGDREGGDRAEGR
GDREGGDRAEGRGERMEDSFAVPDPPKRKKSRWDN
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggcgggccgagtggtaagcgaggtttcggttttgggggattctcc
cttggtggtggaggaggaggaaagaaagaagaacctcgtttgcctccgaaatcacacaca
tcctttggtgctggaacagctggaggttatggcaagaaccagcagctccctgcattctac
aagataggaacaaaaagagcaaattttgatgaagagaatgcgtattttgaagatgacgaa
gaggagtcgaacagcaacgacttgccctatatcccagcagagaactcccccacccgccag
caattccagtctggagggggctcggacagtgaggacgatcctctggatgcttttatggct
caggtggaggaccaagcagccaaagacatgaagaaactggaggaaaaggagaagaagtgt
gaaaagggtattcgtgatgacattgaagaggaagatgaacaagaagcctacttccgctac
atggcagagaatcccacggctggcctcacagcagaggatgaggatgagaacatagactac
gacagtgatgggaaccccatagcccccaccactaagaagatcatcatgcctcttgcccct
atggaccactctgagattgactacccacctttcgagcggaacttctataccgagcatgag
gagcttcacagcctgacgggcaccgaagtgttggagctgagacacaaactcaacctgcgt
gtgtctggggcggcgcctcctaaaccctccaccagcttcgcccactttgggtttgacgag
cagctgatgcacataatccgcaagtcggagtacacccagccaactcctatccagtgccag
ggtgtgcctattgccctaagtggacgtgacatgataggcattgcaaagaccgggagtggc
aagacggcagccttcatttggcccatgctggttcacatcatggaccagaaggagctggag
ccaggagaggggcccatcgcagttatcgtgtgtccgaccagggagctctgtcagcagatc
cacgcggagtgtaagcgattcgggaaagcgtactcgctgcgctcggtggccgtgtacggg
gggggcagcatgtgggagcaggccaaggccctacaggagggggcggagatcgttgtgtgc
accccgggtcgtctgattgaccatgtgaagaagaaggccacctctctgcagagagtgaca
tatctggtgtttgacgaggcagatcggatgtttgatatgggcttcgagtatcaagtgaga
tccattgccagccatgtccggcctgatcgacagactcttctgttcagcgccaccttccgt
aaaaagattgagaggctggctagagacattctagtggaccccatccgtgtggtgcagggg
gacatcggagaggccaatgaggacgtgacccaggttgtggagatcatgcccagtggagtg
gagaagtggggctggctgacccggcgcctggtagagttcacctcctccggctcggtgctc
atcttcgtcaccaagaaggccaactgtgaggagctggctaccaacctgatcgaggagggc
cacagtctgggcctgctacacggagacatggaccagagcgagaggaacaaggtcatcgcc
gacttcaagaagaagagcctgcctgtgctggtggcgactgacgtggcagcccgcggtctg
gatatcccttcgattcgcactgtggtgaactacgacgtggctcgagacatagacacgcac
acacaccgaattggccgcacaggtcgtgctggggagaagggtgttgcctacaccctgctc
accaataaagacacctcatttgctggggaccttgtgcgtaacctggagggagccaatcag
agtgtctctaaggaactgatggacttggcaatgcagaatccctggttcaggaagtcccgc
ttcaagggtggccaagggaagaggctgaacatcggaggagggggtctgggttacagagag
aggcccggcttgggggctgaaagttctgaccgtggtagtagtggttctgtcatggctcac
tatgagggctacagcaagcctactactggagctatgggagaccgcatgtcagccatgaag
tcagccttccagtcccagtacaagaaccactttgtggcagcgtccggcacggttcctaaa
ctcaacaccaagtccagtagctcttcaggctggaccagcgcaggtagtctgagctccatc
cctacaggagctcctgagggcccagaccggccccgcggcccctctgtgtccatggctcct
ccggcagccctcagcgtgggcaccaagatggcaggcttcacccgggctggctccttgagc
tgcgtctcggacggccaggccagtgttgcccagggttactcggcccccgcccctccttcc
cccagggacgcgccccgtgacagacacggcgacgaccgagggcgccatgcagagggccac
catcgtgacaggagtgaacggagcgagcggcacagcggcggggagcgggaccgccacatg
gaccgtgaccgttacggggacaaggatcgccatggtggcagcggtcgccacgtcgatagt
cgtaacggagacggaagcagaagggacagggagcgggaagattggaggggggaccgggag
ggtggagacagggctgaggggaggggggaccgggagggtggagacagggctgaggggagg
ggggaccgggagggtggagacagggctgaggggaggggggaaaggatggaagacagcttt
gcagtcccagatccaccaaaacgcaaaaagagcaggtgggacaactaa
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