Esox lucius (northern pike): 105013132
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Entry
105013132 CDS
T04894
Symbol
tnrc6c
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
els
Esox lucius (northern pike)
Brite
KEGG Orthology (KO) [BR:
els00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105013132 (tnrc6c)
03036 Chromosome and associated proteins [BR:
els03036
]
105013132 (tnrc6c)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105013132 (tnrc6c)
Chromosome and associated proteins [BR:
els03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105013132 (tnrc6c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA_7
RRM_1
UBA
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
105013132
NCBI-ProteinID:
XP_028978956
UniProt:
A0A3P8XVI6
LinkDB
All DBs
Position
LG11:complement(20107358..20180629)
Genome browser
AA seq
1947 aa
AA seq
DB search
MEEKKKKKQEEKKKKESAQKKAPEQTTKVPDSAKPGPTPRPPPLNSSATPSVPPSTGSNG
KRAPSSAQQSQPSPAQPRYSPREVPPRFRQQEPKQLLKRGQPLPPGTLAPLSGRPQPDPS
QNVSGVAHAELPPHTGPGAQYENPRWGQQPANQSSTSASASTNHSGWDPVIIDDSDTEAW
PSISRSSQGPAGGCPSDTDPGGPASSSSISMSMATGANGQTGHFPANHPSSKEASSGPGG
PANHHVGIASGPGASNRGWGSGPGSSPHVPAQSSSIGGGEGKGDGTMGGGGGGRGWGSTS
STTSNFNLNLNPNANPSAWPVLGHDGDGGSLGGVNPNQTPSQPPSNLCKPINTPPAQGNG
NGGGTMGGCTNGNLPVGCVNAWGDSPEQHPSLSTNVSFSSEPLNLNTDGPNQTSKQHETP
SPICSLPSWGGPSGGIGSLGQPPAASPQQVNGEDDSSIWGNNGESKSVTTSKEPSSWDSG
ASGWGSHGNSGGGTSGGWGAKSSGDSWGKQHSGEGQGGWDSPSSPPQPDQQASSWSTRPP
STAAASEGSSEGMEGAGHSRRRDRSSRDESVPLLPAPDLDPRVLCNTGWGQTPVRQHTSW
DMEEAARAQHKADAAGTDSWGGSGPNTPTEPPQGPSNHGPTHRGGLQAAPDWGGSMPPTT
QPGSGWGEPPSNKKPPTAPGVWLNPPQGGSRPGPNMPKGGNQSWGAPEEKSPSWDDPHSK
TPKTQGWREGPKPSQGSWSNSGGGGGGDWGEPGEGKKHGTTTNPPWEGEGGWKESNRGWG
KPGLGGNGGGNGGGGGGWGEPAMAPQRPSGPTQGWGGKPQESSSSSSVVGGGSIGSWGGP
GPVKPSGSGWGGNGGGGGGKQDPSGGEPTGWEEPSPPSIRRKMEIDDGTSAWGDPGAYNK
TVNLWDKNNPGGVPQARPPGNPPGNSSSGSSGNNNIHHAHPSHHLSHHPHTYHGPPPPLQ
SHGGHNPQGPGLNSVPMDPAVPHQTGHPPHSRPPLMGPGWGELPSGHPKPEPSWGEPAPP
PVSVDNGTSAWGQPTGNHGGWGGGDNGPEPYGRGNPTMGSAPCKQAPKSMQGGGEDLGLS
GGQWDPDDGDMWNSQASQESNSWGNGPKKGPPKGKIPGKQEEAWVMSRLVKQLTDMGFPR
DPAAEALKSNNMNLDQAMSALLEKKTELDKRVLGMSDYNNSLINKSCRPPLHSKESSSDR
SPFLDKDGGGGLVEDVHTSPFMPSPGSLGLKLSSLPSTALPLPGQGLGGPQGLAMQNLNN
RQVQSGMFGSGGAAQARAMQMQQPPPPQPSVPPLSSSQPSLRAQVPQFLSPQVQAQLLQF
AAKNIGLNPALLSSPINPQHMTLLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPIRQQEQQ
VARTINNMQQQIQQHQRQLTQALLMKQQPPGSLSSGVHHGKTTMDSFPSHPQAPGLSDLQ
TKELQASLNSYGPYPLCGLTPNMNVNLMDVGGLSMKEPAQPQSRLSQWTHPNPMERLSGG
SSPLEPNLGKHGANLGPPGKPPQIDDGYSPFSMMPGSESPTSSLVPPPDSWGQGKSANDK
MVNGSNITWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTINTNIQDVNRYLQRDRS
GGSSPTSSQNEALPPSTDWPVSVSSQNEALPPSNDWPVSAYPSSFSLSSPETDDPGKLSD
MKSTWSPGPISHPSHASLSHELWKVPQGPRSTTAAPTRPPPGLTNPTKSSSTWGGNSLGL
AQGWSSSYSSGTTWSTDSSNRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQG
NALVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVQRFFAQGQQLASNTSWQAEPG
INQTRMGGSGPRSSHPIGHPHWNSGGSGSSGGMGGGGAKTGGDLLWGGVPKYSGLWGPPS
REEGRVMGSPTPINTLLPGDLLSGESM
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaagaagagaagaaaaagaaggaatctgctcagaaa
aaggcccctgaacagacaaccaaagtgccagactctgccaagcccggacctacccctcgt
cctccccccctcaactccagtgccaccccgtctgtaccccccagcactggcagtaatggc
aagcgcgccccctccagtgcccagcagtcccaaccctcacctgcccagccgcgctattca
cccagagaggttcctccgcgcttccgccagcaggagcccaagcagctgttgaagaggggt
cagccgcttccccctgggacccttgcccccctatctggacgcccccaaccggaccctagt
cagaacgtctctggtgtggcgcacgcagagctgcccccacacactggccccggagcgcag
tatgaaaatccccgctggggacaacagccagccaatcagagttccacttccgcctcggcg
tcaaccaatcacagcggctgggatccagtgatcattgacgatagcgacacagaggcctgg
ccctccatttcccgcagcagccagggccctgcaggaggatgtccctcggacactgaccct
ggtggtccggccagcagcagcagcattagtatgagcatggccacaggggccaacggccag
acaggccacttccctgccaaccaccccagcagcaaagaggccagttctggacctggtggc
ccagccaatcaccatgtcggcatagcctcaggcccaggagcatccaatcgtggctggggt
tccgggcccggttcctccccccatgtccctgcccagtcctcctcgattgggggtggggag
ggaaagggtgacggcacaatgggaggaggtgggggaggcaggggctggggctcaacttcc
tccaccacctctaactttaacttgaaccttaaccccaatgccaacccctcagcctggcct
gtgctgggtcacgatggggacggaggcagcttagggggagtcaaccccaaccaaaccccg
tctcaacccccttctaacctctgcaagccgataaacactcctcccgcccagggaaacggt
aacggaggaggaaccatggggggctgtaccaacggcaacttgccagtagggtgtgtcaat
gcctggggagactccccagagcaacacccctccctgtccacaaatgtgtcttttagctca
gaacctctgaaccttaacactgatggaccaaatcaaactagcaaacagcacgagacaccc
agccccatctgcagtctacccagctggggaggcccttctggaggcataggctccctgggt
cagccccctgctgcttctccccagcaggtcaacggagaggatgacagttccatctggggc
aacaatggagagtcaaagtcagtcaccacctccaaagagccttcaagttgggactctggt
gccagtggctgggggagccatggaaacagtggtggtggaacatctggaggctggggggcc
aagagcagtggggatagctggggaaagcagcattctggggagggccaagggggctgggac
tcccccagctctccaccccagcctgaccagcaggccagctcatggagcacccgtccccct
agcactgcagcagcaagcgaaggcagcagcgagggcatggaaggagcggggcattcccgt
cgaagggatcgatcatcccgggatgaatcagtccccctactacctgcccctgacttggac
ccgagagtgttgtgcaatacgggctggggccagacccccgttcgccagcacacctcctgg
gacatggaagaggcagcccgcgcccaacacaaggcagacgccgcagggacagactcctgg
ggaggctctggtcccaatacacccacagagcctcctcaggggccctccaaccatggcccc
actcatcggggtggtcttcaggctgcccctgactgggggggttccatgcctccaaccacc
caaccaggctctgggtggggtgagccaccgagcaacaagaagccccccactgctccagga
gtttggttgaaccccccacaaggaggctcaaggccaggccccaatatgcccaaaggtgga
aaccagtcctggggagctcctgaggagaagtcccccagctgggatgacccacacagcaag
accccgaagactcagggctggagggaggggcccaagccatcccagggcagctggagcaac
agtggtggtggaggtggaggggactggggagagccaggagaaggcaagaagcatgggact
accaccaaccctccctgggagggagaaggaggctggaaagagagcaaccggggctggggt
aaacctggtctgggtggaaatggtggaggaaatggaggtggtggaggtggctggggtgag
ccagccatggctcctcagcgccccagtggccctacccaaggatggggtggcaagcctcag
gagagctccagtagtagtagtgtagttggaggaggaagcattggctcctggggtggccct
ggccctgtaaagcccagtggatcaggctgggggggcaatgggggaggaggagggggtaag
caggacccctcgggaggagagcccacagggtgggaggaaccttccccaccctccatacga
cgcaagatggagattgatgatggtacttctgcttggggtgacccaggtgcctacaacaag
acagtcaacctgtgggacaagaacaacccgggaggggttccccaagctagacccccaggg
aaccctccggggaactcctcttctggctcctctggcaacaacaatatccaccacgcccac
ccatcccatcacctttcccaccatcctcacacataccacggtccaccaccaccccttcag
agccacggggggcacaacccccagggtccaggcctgaacagtgtgcccatggacccagct
gtgcctcaccagactggacatccaccacacagcagaccacccctcatgggtccaggctgg
ggggaactgcccagtggccaccccaagccagaaccctcgtggggggagcctgcgccccct
ccggtcagtgtggacaacggaacctcggcctgggggcagcccactgggaaccatggtggc
tgggggggtggcgacaatggcccagaaccttacggacgtggtaacccaaccatgggatct
gcaccttgcaaacaagctcctaaatctatgcaaggtggaggggaggacctgggtctgtct
gggggacagtgggaccctgacgatggtgacatgtggaacagccaggcctcccaggagagc
aactcctggggcaatggacccaagaagggcccacccaaggggaaaattccaggaaagcag
gaggaagcatgggtcatgagtcgcctggttaagcagctgacagacatgggctttccgaga
gatccagcggcggaggctctgaagagcaacaacatgaacctggaccaggccatgagtgcc
ctgttggagaagaagacagaactggacaagcgggtgttgggcatgtctgactacaacaac
agtctgatcaacaagagctgccggcctcccctccactccaaagagtcctcctcagaccgc
tctcccttcctagacaaggacggtggtggtggcctggtggaagacgtccacacctcaccg
tttatgccttcccccgggtctctcggcctgaaactcagctccctgcccagcactgccctg
cctctgcccggccagggcctgggtggcccacagggcctagccatgcaaaatttgaacaac
agacaggtgcagagtggaatgtttgggagtggtggagcagcacaagcccgggccatgcag
atgcagcagccgccacctcctcagccgtcagtgccacctctgagctcctcccagcctagt
ctacgtgctcaagtgcctcagtttctctcccctcaggttcaagcacagctcttacagttt
gcagcaaaaaacattggtctgaatcctgcacttttaagctcaccaataaaccctcaacat
atgacccttttgaaccaactataccagctgcaactggcgtaccagcgtttacaaattcag
cagcagatgttgcaagcacagcgcaatgtttctggccccatccgacagcaagagcagcaa
gtcgcacgtacaatcaacaacatgcagcagcagatccaacagcaccagcgtcagctgacc
caggccctcctcatgaagcagcagccccctggctccctgtcctctggcgttcaccacggc
aaaacaaccatggactccttcccaagccacccccaggctcctggcctgtccgacctgcag
accaaagagctccaggcctctcttaactcctacggcccctatcccctctgtggactgact
cctaacatgaatgtaaacctcatggatgtggggggcctgtccatgaaagagcctgcccag
ccccagtcccgcctctcccagtggacacaccccaaccccatggagagactgtcaggaggc
tcctcccccctggaacctaacctgggcaagcatggtgccaacctgggcccccccggaaag
cccccacagatagatgatgggtacagccccttcagcatgatgccaggctcagagtcaccc
actagctccctggtgccacctcctgacagttggggccagggcaagagtgccaatgacaag
atggtcaacggctctaacatcacctggcctccagagttctgcccaggcgtaccctggaag
ggcctgcagaacattgaccctgagaacgaccctaacatgaccccaggaagcgttcccagt
ggccccaccatcaacaccaacatccaggacgtcaaccgctacctgcagcgtgaccgcagc
ggagggtcctcccccacctcttctcagaacgaggccctgcctccctccaccgattggcca
gtcagtgtctcttctcagaacgaggccctgcctccctccaacgattggccagtcagtgcc
taccctagctcgttcagtctgtcttccccggaaacggacgacccaggtaaactgtcagac
atgaagtctacctggtccccaggacccatctcccacccctcccacgcctctctgtcccac
gagctgtggaaggtcccacaggggccccgcagcaccacggcagcccccacccggccccct
ccgggtttaacaaaccccaccaagtcctcctccacttggggaggcaactctctgggcctg
gctcagggctggagcagctcatactcctcaggcaccacgtggagcaccgacagctccaac
cggaccagtagctggctggtactgcggaacctcaccccccagattgacggctccaccctg
cggacgctgtgcatgcagcacggccccctcatcacattccacctcaacctgacccagggg
aacgcactggtgcgctacagctccaaggaggaggccgccaaggcccagaagtccctgcac
atgtgtgttctgggtaacactaccatcctggccgagttcgctggagaggaggaggttcag
cgcttctttgcacagggccagcagttagcctcaaacaccagctggcaggccgaaccaggc
atcaatcagacacgaatgggcgggtcagggcccaggtcctcacaccccattggccacccc
cactggaactctggcggcagtggcagtagcggtggtatgggaggaggcggagcaaagaca
ggtggagacctgctgtggggcggtgtgcccaagtactccggcctctggggaccacccagt
agagaggaggggcgcgtaatgggaagccctacaccaatcaacacattgctgcctggagac
ctgctgagtggagagtccatgtag
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