Esox lucius (northern pike): 105013158
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Entry
105013158 CDS
T04894
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
els
Esox lucius (northern pike)
Pathway
els03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105013158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
els03041
]
105013158
03009 Ribosome biogenesis [BR:
els03009
]
105013158
Enzymes [BR:
els01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105013158
Spliceosome [BR:
els03041
]
Complex A
U1 snRNP components
U1 related factors
105013158
Complex B
105013158
Ribosome biogenesis [BR:
els03009
]
Eukaryotic type
Pre-60S particles
Helicases
105013158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105013158
NCBI-ProteinID:
XP_010872800
UniProt:
A0A3P8ZSC4
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All DBs
Position
LG11:19765047..19770800
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AA seq
620 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGGGRGGGKFGNPGERLRKKHWNLDELPKFEKNFYQ
EHPDVTRRSPQEVEQYRRAKAVTVKGRDCPNPMMKFHEASFPTYVMDVINKAGWTEPTPI
QAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSTCVYGGAPKGPQLRDLERGVEICIATPGRLIDFLEVGKTNLR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQI
NVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFVETKRRCDDITRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINYDYPN
NSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVSVLREANQAINPKLLQMAEDRGG
RSRGGRGGSGFRDDRRDRYSGGRRDFGSFRDRDNDRGFDSGPKKVFGTNSQNGGYGASNY
DKSSNGFAGGGYGSNGQSNYGASQAGAFQTQNFQAPQFGANQGGAQNGMSHPQFPFPQQQ
APQQQPPPMVPFPMPPQFPQ
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcttttccgacagagatcgtggtagagatagaggttatggcagcggcccacct
cgttttggaggtggaggtggtggtcgaggtggcggaaagtttggtaatcctggtgaaaga
ctgcgcaagaagcactggaacctcgacgaactcccaaagttcgaaaagaacttttaccaa
gagcaccccgatgttactaggagatctccgcaagaggttgagcagtacagaagagccaaa
gctgttacagtgaaagggagggactgcccaaaccccatgatgaagttccatgaagccagt
tttccaacctacgtgatggatgtcatcaataaagcaggctggacagaaccaacgcctatc
caagcccagggttggccactggctttgagtgggaaggatatggttggcattgcacaaact
ggctctggaaaaactctctcatacctgttgcctgcaattgtgcacattaaccaccagcct
tttctggaacgtggtgatggacccatttgtctagtgcttgccccaacccgtgagctggca
cagcaggtccagcaggtggcagcagagtacggcagagcgtcccggctcaagtccacctgt
gtttatgggggggcaccgaaaggaccccaactccgtgacctggaaaggggtgttgagatt
tgcatcgccacgcctggcaggctcattgacttcctagaggtgggaaaaaccaacctgcgt
agatgcacttacctggtcctggatgaggctgacagaatgctcgatatgggctttgagcca
cagatccggaagattgtagaccaaattcgacctgaccgacagacactgatgtggagtgcc
acatggcccaaagaggtgcgccagctggcagaagacttcctcaaggactatgtccagatc
aatgtgggcgccctgcagctgagtgccaaccacaacatcctgcagatcgtggatgtttgc
aacgatggagagaaggaagacaaactccttcgcctgcttgaggaaatcatgagtgaaaag
gaaaacaagaccatcatctttgttgaaaccaagaggcgctgtgatgatatcaccaggagg
atgaggagggatgggtggccagcaatgggtatccatggtgacaagagccagcaggagaga
gactgggtgctcaatgagttcaagttcgggaaggctccaattctcattgctacagatgtc
gcttccaggggtctagatgttgaagatgtgaaatttgtcatcaactatgactaccccaac
aactctgaggactatatccaccgcatcggcagaaccgcccgcagccaaaagaccggcaca
gcctacaccttcttcacccccaacaacatgaggcaggccagtgaccttgtctctgtgctc
cgcgaggccaaccaggcaatcaaccccaagctcctccagatggcggaagacagaggaggt
cgttcaaggggaggcagaggtggtagtgggttcagggacgaccgccgggataggtactct
ggaggaaggcgggacttcggtagctttagggacagggataacgatagaggttttgacagt
ggaccaaagaaagtctttgggacaaattcacagaacggaggctatggggctagcaactat
gacaaaagcagcaacggttttgccgggggtggctacggcagtaacggacagtcaaactat
ggtgccagccaggcgggggcgttccaaacgcagaacttccaggccccacagtttggtgcc
aaccagggcggtgcccagaatggcatgagccatccacagttccccttcccccagcaacaa
gctccccagcagcagcctccgcccatggtgccctttcccatgccccctcagttcccccag
taa
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