Esox lucius (northern pike): 105013750
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Entry
105013750 CDS
T04894
Symbol
col20a1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
els
Esox lucius (northern pike)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
Interfer-bind
YjeF_N
Motif
Other DBs
NCBI-GeneID:
105013750
NCBI-ProteinID:
XP_010873815
LinkDB
All DBs
Position
LG12:19808919..19834268
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AA seq
1576 aa
AA seq
DB search
MLFNCLRAAFPALMVPYLVPLLLLLSTSGIHSQGRLKLTVLSEDRLQMKWKEADGPVQGY
KVRVKPISEVPQPELMLTTTRGRATVVGLDSSQEYTLQVLVLNGTLEKLIAKRRFTIEGL
REEELVRSGSREQRKKALPGGSGSGELDDLIETLVDVPTVVYREPTTTTTEPPATPDTTT
PVNEMLTEKASREKRKRKKDRSKVDDKEEQGTTQGEDPASDREKLRKTVSGYPVTEVSTR
MAFECDITAAADVVLLVDGSWSIGRTNFRRVRDFLEGLVVPFQIGPDRVQIALSQYSGDP
RTEWQLNNFTTREQLLEAVRNFRYKGGNTFTGQALLHVLEENLREESGARPDTPRFLILL
TDGKSQDDAIAAANRLKSTGVEIIAVGVKNADEAELRQVASEPLDLNVYNVNDFPLLSKL
VGRLVQILCKKIEERNIIRRKARPTEDPVLSYPSPTDMEFSELGPREVRLGWTRPGRPVL
QYRVVFHSAEGPSPQEVVVNGTVTSVLLGGLTSQTLYHISVFPVYEDNVGLALRGTVTTL
PLAMPVGLEVTPSSPSSLRVRWGPAAGATQYMALYSALSNGEPDDAKEVKFGADQTDVVL
SGLLPETDYSVTLYALYDEDPSDPVTAVATTQPLPPPVSIRFPMVSHSMIRVSWVPGGVG
VPRHRITCSTNHGSDVKKVEVTGVNSVLLQNLSSLSRYLVSVQSQYQQGLSSPLTANVTT
LKVPAPSDLRVTNFSGNDITVQWESAADDVVSYLIKWISLSGGDLRQLRVDGDSEGAILE
EVQDDKEYQISLSALYADGAQSEAVAIRYSTLSGGGPSSLSISEETAVSLLVSWVPPNAH
VLQYHVSYTALTGGETQENTVLVSGSERRVVLRSLLPDTRYSVLVTAEYRNREGGSASAQ
GKTTSLRVSSVSVMRSDHSSICVSWRPVPAVSGYRIAAQSFRDKETKQEIVDASSSSYCF
TELQPETVYRISVHSRLETVEGAAVSILHPTASAPARIPIYPRLNPIRNEVCPVVTIRHS
IVKGFDMMEAFGLTQKAHSSVEGVSTEPFVFNTLPTYTVYRDVQLTQSTGFIHPAGFSSE
HTISMAFRLLQDTPKEPFALWQLTDNDFQPKMGVVLDPGSRLLQYFSLDYRGEVQELTFN
QPQVHRLFYGSFHKIHLSINQVSVSLSVDCQRVGERPARPLGTLPTDGFEMLGKLTKTRG
PQSGSAPFQLQSFEIVCNTTWALEDTCCDLPGLRDEESCPAPADACTCTSDVPGAPGVTG
PPGKPGPRGEKGEKGEEGQKGEMGPSGKIGSEGVLGPLGSRGPRGLTVQGKVGPPGARGE
KGEVGKPGGQGSPGPPGLKGNEGSPGPKGIRGSEGNMGAPGITGPRGFQGMPGHPGVVGE
RGPLGGVGPTGLPGNKGERGEKGEPQSMAMIFQLVTQACEQLVHNEVLKLDSFLTEMSRK
PVPIEEPVGPPGEPGIPGGKGPPGQRGHQGRLGTRGDPGKPGYPGEMGRRGPPGEKGSLG
SNVQGPQGIKGFAGLPGEAKMGSPGPRGEDGKTGLLGIAGTVGQPGEVGPPGVCDSTGCH
GGAQPQAEDPYFGYQP
NT seq
4731 nt
NT seq
+upstream
nt +downstream
nt
atgctttttaactgtctacgggctgcctttcctgcactgatggtgccttacctggtcccg
ctcctcctcctactgtctacctctggaatccacagccaaggacgtctgaagttgacagtg
ctttcggaggatcggctacagatgaaatggaaggaagctgatgggcctgtccagggatac
aaggtccgcgtgaagcccatctcagaggtgccgcagcctgagctgatgctgacaaccaca
cgcggccgcgctacagtggtaggtctggactccagccaggagtacaccctccaggtccta
gtgctcaacggaaccctggaaaagctcattgccaagagacgcttcaccattgagggcctg
cgagaggaggagctggtccgtagtggcagtcgtgaacagcggaagaaggccctgccaggg
gggtcggggtcaggggaactggacgacctcatagagaccctggtagatgttcccactgtg
gtctacagagagcctacaaccaccaccacagagccaccagctactcctgacacaactacc
ccagtgaatgaaatgctgaccgagaaggcttccagagagaagaggaagaggaagaaggat
cgctctaaggtggatgataaggaagagcaggggacaactcagggggaggatccggcgtcc
gacagggagaaactaaggaagacagtctccggctatcctgtcacagaggtatccactcga
atggcctttgagtgtgacatcacagcagccgccgacgtggtcttgttggtggacggctca
tggagcatcgggcgcaccaacttcagacgtgtccgggacttcctggagggcctggttgtg
cctttccaaatcggccctgaccgggtacagatcgccctgtctcagtacagcggagaccct
cgcactgagtggcagctgaacaacttcacaaccagggagcagctgctggaggcggtccgg
aacttccggtacaagggaggcaacaccttcaccggccaggctctgctgcacgtcctggag
gagaacctgagagaggagtcgggagcgaggcctgacacccctcgttttctgatcctgctg
acggatgggaagtcgcaggacgacgccatcgctgcggccaaccggctgaagagcacaggc
gtggaaatcatcgccgtaggtgtgaagaatgcagacgaagcagaactgcggcaggtggcg
tctgagcccctggatctcaacgtctacaatgtgaatgacttccctctgctcagtaaactg
gtgggccggctggtgcagattctctgtaagaagatagaggaacgcaacatcatcaggaga
aaagcgcggccgaccgaggatcctgtgctgtcctaccccagccccacagacatggagttc
tctgagctgggccccagggaggtgcggctgggctggaccagacctggccgaccggtcctg
cagtacagagtggtgttccacagcgctgagggaccaagcccacaggaggtggttgtgaac
gggactgtcaccagtgtgttgctggggggactcacctctcagaccctctaccacatatca
gtattccccgtctacgaggacaacgttggcttggccctcagagggactgtcaccacattg
cccctggccatgcctgtgggtctggaggtgaccccctcgtcacccagcagtctgagggtg
cgttgggggcccgcagcgggggccactcagtacatggccctgtactctgccctcagcaac
ggagagcctgacgatgccaaggaggtgaaatttggggcagaccagactgatgtggtgctg
tctggtttactgccagagacagactactccgtcaccctgtacgcgctgtatgacgaagac
cccagtgaccctgtcacagccgtcgccaccacacaacccctgccccccccggtgagtatt
cggtttcccatggtgagccacagcatgatcagggtcagctgggttcctggaggggtcggc
gttccccgtcacagaatcacctgcagcaccaaccacggcagtgacgtcaaaaaggtggag
gtgacaggtgtgaactcagtgctgcttcagaacctgtcctccctgtccagatacttggtg
tcagtacagtcacagtaccagcagggcctgtcctccccactcacagccaacgtcaccacg
ttgaaggtacccgccccctctgatctcagagtcaccaacttctcaggaaatgacatcaca
gttcagtgggagtcagcagcagatgatgttgtgtcttacctaatcaaatggatctcactc
agcggtggagacctgagacagttgagggtggatggggacagtgagggggctatactggag
gaggtgcaggacgataaggagtatcagatctcactgtctgccctttacgctgacggagcc
cagagtgaggcagtggcaatacgatacagcactttgtcaggtggcggcccgtccagcctg
tccatctcagaggagacagcagtgagtttgttggtgagctgggttcctcccaacgcccac
gtcctgcagtatcacgtctcctacacagccctgacaggaggggagacgcaggagaacact
gtgttggtttccggcagcgagagacgggttgtgctgcggtccctgttaccggacacacgc
tacagcgtcctggtcactgctgagtaccgcaaccgcgagggagggagcgcctcggcccag
ggcaagaccaccagtctgagggtgagcagtgtgagtgtgatgaggtctgatcactccagc
atctgtgtgtcttggaggcccgttccagctgtgagcggataccgcattgccgcccagtct
ttcagagacaaagagacaaagcaggagatagtggacgcatccagtagcagctactgtttc
actgagcttcagccggagactgtgtaccgtatcagtgtgcactcccgcctcgaaacagta
gagggagctgcagtctccattctccaccccacagcctctgccccggccagaatccccatt
tatcccagactgaaccctattcgcaatgaagtatgccctgtggtgaccatcagacacagt
attgtaaaagggtttgatatgatggaggctttcggtctgacccagaaggctcactcctct
gtggagggcgtgtctactgaaccctttgtcttcaatactctacccacctacactgtgtac
agagacgtccagctcactcaaagcacggggttcatccacccggcaggcttttcttcagag
cacaccattagtatggcgttccgtctactgcaggacacccccaaggagccctttgcactc
tggcaactcactgacaatgacttccagcccaagatgggcgtggtgctagaccctggaagc
agactgctgcaatacttcagtctggactacagaggagaagttcaagagctcactttcaac
cagccacaagtccacaggctgttctatggcagtttccacaagatccacctgtccatcaac
caggtaagcgtatccctctctgtggactgccagcgtgtgggtgagaggcctgcccgcccc
ttgggcactctgcccacagacggctttgaaatgctgggcaaactgacgaagacccgtgga
ccacagagcggctctgccccgttccagctgcagtcttttgagatcgtgtgcaacaccacc
tgggcattagaggacacctgctgtgatcttcctggcctgagagatgaggagagctgcccg
gcccctgccgatgcctgcacctgtacctccgacgtgcctggagccccaggtgtcaccgga
ccgcctggaaaaccgggtcctcgtggagaaaagggtgaaaaaggggaggaaggacaaaag
ggtgagatgggcccttcaggaaaaataggttcagaaggcgtgctggggcccttgggaagt
cggggccctcgaggattgacagttcagggcaaagtgggacctccaggggctaggggagag
aagggggaggtgggaaagccaggaggccagggttcaccaggtcctcctggtctcaagggg
aatgaaggatcccctggacctaagggcatcagaggttctgaggggaatatgggagcacca
gggattactggaccaagaggtttccagggtatgccaggacacccaggggttgttggagag
aggggacctttggggggggtgggccctacaggtcttcctgggaataagggtgaacggggg
gagaagggagagcctcagtccatggcaatgatctttcagctggtcactcaggcttgtgag
cagttagtgcacaatgaggtgctgaagctggactcgttcctgactgagatgagccgtaag
cctgtgcccattgaggagccagtgggtcccccaggagagcctggtataccggggggaaag
ggtccaccaggacagagggggcaccagggacgacttgggaccaggggggatccagggaag
cctgggtacccaggagagatgggacgtagaggaccccctggagagaaaggcagcttaggg
tccaatgtccagggaccacagggaatcaaaggatttgcgggtcttccaggagaggccaag
atgggcagtcccggtcctagaggagaagatggcaagacgggacttctgggcattgcaggg
acagtgggacagccaggagaggtcggtccccctggtgtctgtgatagcactggctgtcat
ggaggtgctcaaccacaagcagaggacccatattttggatatcagccttga
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