Esox lucius (northern pike): 105014706
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Entry
105014706 CDS
T04894
Symbol
shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
els
Esox lucius (northern pike)
Brite
KEGG Orthology (KO) [BR:
els00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
els03036
]
105014706 (shoc1)
Chromosome and associated proteins [BR:
els03036
]
Eukaryotic type
Meiosis-specific proteins
Others
105014706 (shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
DUF1651
Motif
Other DBs
NCBI-GeneID:
105014706
NCBI-ProteinID:
XP_019907733
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All DBs
Position
LG13:2506741..2526693
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AA seq
1572 aa
AA seq
DB search
MILSNQLNWIWDNRWEINLIKVAWTREGSEDRYAFSSHVFSAVKYRAFDYTFEASTSYRL
TMSCLALPLPYQLGSSDLYPPTGSPPDATYRKPWSRGNVISTCKLFVSGSVLDDLGTKGL
PTDCLEKLIVSLSQVKGDPLEVIPSSNPKSQLDVDREDVAWLLREATNDTAYFVCNESFS
KRAVAQLSPRHHLKEDVLFVDHLPQFKKRLPSLKAKLSRLRTLPVSDPLLTTGGALSEES
IFSHCAAYEVLLKDKTESSKTTLNADEAFNKELLLNEESLMLPVEMDSCTAKREDCIPFS
NLYKLLNLLPELVEDQTPCLDILTTATSLVSLDTSQLEEPLLPLNDSHCELNETLRSSDH
LMLHTQMELDLLLSLSPKPSPTHICLSPSQLQPEQVSPVDRHFFVSKRDQEEMERAVWSA
EKHPHFILDFLLAEPQKSEPTLQFQPLNEAMKLLLIGCDNTSTLGGGMEPFDLGPITPGL
TGMYPEGSCDFTEHMTTPAPPHTVVTLSSRTEDFTPLPLCQTDELPVPLAEINVKSILRN
VTQMTVTSHQDRGRNENTAKAGTTTHKREISGNTAFSAQAGTNSQEKENTGNVAVTAQSS
TFFQEKDRSGNMVFSAAPVSPGNMKVSAAQATTTSYMGKCDHAVGTQMMEQVIPDQRDDV
LKHSTARPAVRDSHNSYTMAKSQKILDPLSSFIMLRSQQRTVSVSPQKYTSTPVSQVMEL
TPPPATKELHHGLEVKPVVSANRAGNDIIQPVSSDRHDCGVIHIQATESQFQAYCELRAF
VLPCLSRARELGLTSTSCGDFRTLEPDHTRYLLKQQEKELSVRQGQDPEALYNQLALIHV
LVTVKDMIFKWDLSTALEYLSKASEACVGQSLNALVRKLQVVLYLRQRNQEPNTKMLELQ
EVLSTWVQRKSSGAQNFQVLVITTTDSNRDVVVKGLSQVKVSGKTVVAVSSEGRRTKLEV
AVLVERCEPPRTPSIHLCVYRTCYGEHSLSCPLCSPSLQSCWCLVVSCQHLGSDLPWNRF
SLVVEFDHTEHTPWAAVCAEKNIPHITFQTTIPNPSENDSWALERSVPFFLFVTESLLSC
PLLLQILESTYNITVLERSHSPSLQILGGTHHYGVVTVDESTAVIIQELEELCQDRACEA
VVMRLTALSLQYSRCWLILYCQQESGLKSEGFNNLALVYSSLVLFGLETEDLDVKVVILT
QVVDIAKWICQIAFHTLLSSDRDPLNYLDREWLFVLPSEEEWCLLGFPCVNPLVAQLMLK
RSPSFHWLLGASLSQLQALFPEVPLKVLKLFSDITSLYKLSASSPESPTELRHHRDYGNP
TNPWPTSQDNPHTHPGGHTPHGRPKPLKPSSFITGSPRAESGEWSLYRQGSLKAKEDSPD
FQVDLSRCFRSQPVPFQQPWRLNPLEAEEPSTEEKFVGWNRVEEEWTDRVPLVPFGSPRD
HAAGDPFQTGPSSPFSYRNNQQRPVCSDNQGASSTVARGDLQQSPDNHHPGLTSPRVALF
WGSRPGSPYNNTWAGGDVSVSPGYGTSYRTERKRRAECPAMIGRVLTPLKRGKLRYEKVP
GRRDGQTRLRFF
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atgattttgtccaatcagttgaattggatatgggataaccgctgggaaataaacttgatt
aaagtcgcgtggactcgggaagggtctgaagataggtacgctttctcaagtcatgttttc
tctgcagtcaaatacagagcatttgactatacctttgaggcttctactagttacagattg
accatgagctgtctggcccttcctttgccctaccaactgggcagtagtgacctataccct
cccactggcagtcctcctgatgccacctacaggaaaccatggagtagaggaaatgtgatt
tccacctgcaaactgtttgttagtggatctgtacttgatgatctgggaactaaaggactg
ccaacagactgtcttgaaaagctgattgttagtctgagtcaggtgaaaggggatcctctg
gaggtgattccaagctccaaccccaaatcacagcttgatgtagaccgagaggatgtagca
tggctcctgagagaagctacgaatgacacagcgtactttgtctgtaatgagtcctttagc
aagagggcagtggcgcaattgagcccaagacatcaccttaaagaggatgtgctgtttgtt
gatcacttgccacagtttaagaaacgtctgccatctttaaaagccaaattgtctcgactg
aggaccctgcctgtgtcagacccactcctcaccactggaggcgccctgtcagaggaaagt
atattcagccattgtgctgcctatgaggtactccttaaggacaagacagaaagctcaaaa
accactttgaatgctgatgaggcattcaataaggagttgttgttgaatgaagagtccttg
atgttacctgttgaaatggattcctgcacggccaaaagggaagattgcatccccttttca
aatctgtataaattgttgaatcttctaccagaattggtggaggaccaaaccccttgtctg
gatatactcactacagcaacttcacttgtctcactggacacatctcagcttgaagagccg
ttgttgcctctcaatgactctcactgtgaattgaatgaaaccctcaggtcatcagatcat
ttaatgttgcatactcagatggagctggacctactcctcagcctctctcccaaaccaagc
ccgactcatatctgtctgtccccctctcaactacaacctgagcaggtctctccagtcgac
agacatttttttgtgtccaagagagatcaggaggaaatggagagggcagtttggagtgca
gagaagcaccctcacttcatactggactttcttttggcagagcctcagaagtcagaaccc
actttgcagttccagcctttgaatgaagccatgaagttattgctgattggttgtgacaac
acttcaacacttggaggggggatggaaccttttgatctgggaccaatcacaccagggctg
actggcatgtatccggaaggttcctgtgacttcactgagcacatgaccaccccagcgcca
ccccacactgtggtgacactgagcagtaggacggaggatttcacaccgctacccctctgc
cagacggacgaactgccagttccactcgctgagatcaatgtcaagtccatcctgagaaat
gtaacacagatgactgtgacatcccatcaggacagaggaagaaatgaaaatactgctaag
gctggtaccactacccacaagagagagatatctgggaataccgccttttcagctcaagct
ggtaccaattcccaggagaaagagaacactgggaatgtagccgtcacagcacaatcatct
actttcttccaagagaaagacaggtctgggaatatggtcttttcagcagcacctgtttcc
cctgggaatatgaaagtgtcagcagcacaggctaccaccaccagttacatggggaaatgt
gaccatgcagttggaactcagatgatggagcaggtcatacctgaccagagggatgatgta
ttaaaacactcaaccgccagacctgctgtgagagacagtcacaatagttatactatggct
aaatctcagaagatcctggacccgctatcctctttcataatgttgaggtcccaacagaga
actgtctcagtgtcacctcagaaatatacaagcaccccagtgtcacaggtgatggagctg
acacctccgccagccaccaaagaactgcatcatgggttagaggttaagcctgttgtcagt
gcaaaccgtgcaggaaatgacatcattcagcctgtatctagtgacagacatgactgtgga
gtcatacacatccaagccacagagagtcagttccaggcgtactgcgagctgcgagcattt
gtcctgccctgcctatccagagcccgggagctaggcctgaccagcacgtcctgtggagac
ttcagaaccctggaaccggaccacacgcgatacctcctgaaacaacaggagaaggagctc
agcgtgagacagggccaggacccagaggccctatacaaccagctggctctgatacatgtg
ctggtgacagtgaaggacatgatcttcaagtgggatctaagcactgcgctggagtacctg
tcgaaggcctcggaggcttgcgtggggcagagtctgaacgcgctagtgaggaagctacag
gttgtactgtaccttaggcagaggaaccaggagcccaacaccaaaatgctagaactccag
gaagtcctgagcacatgggtgcagaggaagagcagtggggcccagaacttccaagttttg
gtgataacgacgactgactcaaacagggatgtggttgttaaaggcctgagccaagtcaaa
gtgtcaggcaagactgttgttgccgtgagttcggaggggaggagaaccaagctggaggtt
gcagtgctggtagagaggtgtgagcctcctagaactccatctattcacctttgtgtatat
aggacctgttatggagaacattccctttcctgccctctctgctctcccagcctgcagagt
tgctggtgtttggtggtgtcttgtcaacacctgggatcagacctcccgtggaaccggttc
tccctggtggtggagtttgaccacacagaacacaccccctgggccgcggtctgtgcagag
aagaacatccctcacatcacctttcagaccacgataccaaacccctctgagaatgacagt
tgggccctggaacgcagcgttccctttttcctgtttgtgactgaaagtcttctcagctgc
cctctgctgctgcagatactggagtcaacgtataatataaccgtattggagcggagccac
agcccgtccttacagattcttggagggactcaccactatggagtggttacagttgatgag
agcactgccgtcatcattcaggagctggaggagctgtgtcaggacagggcctgtgaggct
gtagtgatgagactgactgccctgtctctgcagtacagtcgctgctggctcatcctctac
tgccagcaggagtcgggattgaagagtgagggcttcaacaacttggcattggtttactcc
tctctggtgttgtttggacttgagactgaggacttggatgtcaaggtggtgattttaaca
caagttgtggacatcgccaaatggatctgccagatagccttccacacactgctgtctagt
gacagagatcctctgaactacctggacagagaatggttatttgtattgccctcagaggag
gagtggtgcctgctaggcttcccctgtgtgaaccccctggtggcccagctgatgttaaag
aggagcccgtcttttcactggctccttggggcctccctttcccagctacaggccctattc
cctgaggtccctctcaaagtactgaagctcttcagtgacatcacgtctctgtacaagctg
tctgcctcctctccagagtctcccactgagctcagacatcatagagactacggtaacccc
accaacccttggcccaccagccaagacaaccctcacacccatcctgggggacacacacct
catggccgccctaaaccgttgaaacccagcagcttcatcactggctctccccgagctgag
agtggggagtggagcctctatagacaaggttcgctcaaggccaaggaggacagcccagac
ttccaggtggacttgagtcgctgcttcagatcccagccggtccctttccagcagccctgg
aggctcaacccattggaggctgaggagccgagcaccgaggagaagtttgtgggatggaat
agagtagaagaggagtggacggacagagtacccctggtgccctttggttcgcccagagat
catgcagcaggggatccgtttcaaacaggcccctcatccccatttagctacagaaacaac
cagcagagaccagtgtgctccgacaaccagggagcctcctctacagtagcccgtggtgac
ctgcagcagtcccctgacaaccaccacccaggcctgacttcacctcgagtcgctctgttc
tgggggagccgcccaggtagcccctataacaatacctgggccgggggagacgtgagtgtg
tcacctggctacggcaccagttacaggacggagaggaagaggagggcggaatgcccagcc
atgattggacgagttttaacacctttgaaaaggggaaagctacgttatgagaaggtgcct
ggccggagggatggacagacaagactgaggtttttctaa
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