Esox lucius (northern pike): 105015132
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Entry
105015132 CDS
T04894
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X2
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
els
Esox lucius (northern pike)
Pathway
els03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105015132 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
els03041
]
105015132 (prpf4)
Spliceosome [BR:
els03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
105015132 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
PRP4
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
105015132
NCBI-ProteinID:
XP_010876315
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Position
LG14:14436326..14444347
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AA seq
506 aa
AA seq
DB search
MSDEDEAPLVKKTRIFYGSLEEKERERLGREASGSGKDSVKAGIEAGNINISSGESLELE
ERVSERQSEVLAEFERRKRARQITVSTDAAEVKACLRALSEPITLFGEGPAERRERLRNI
LSVVGPDALKKSKKDDDKSKRSQEECQQTWYHEGPSTLKEARLWLAKYSLPRAMKRLEIT
KANREIPESTRTVRTQELHKTLRNLNNFCSQIGDDRPISFCQFSPNSKMLVTASWSGLCK
LWNVPDCTLVRTLRGHNTHVGAICFHPQATVTLEDSDVNMASCAADGSVKLWSLDSDEPV
ADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDLHFHPD
GSLAGTGGLDSFGRVWDLRTGRCVMFLEGHLKEIYSIAFSPNGYHAATGSGDNTCKVWDL
RHRKCIYTIPSHQNLVSSVKFQPNDGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKVM
GVDMSPDGQLIATCSYDRTFKLWMSE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgaggatgaagctccactggtgaagaaaaccaggatcttctatggcagttta
gaggagaaggagagggagaggctggggcgagaggcctctgggtcaggcaaagattcggtc
aaagcaggcatcgaggctgggaacatcaacatttccagtggtgagtcactggagcttgag
gaacgtgtgagtgagcgccagtctgaggtattggctgaatttgagcgcagaaagagagca
agacagatcacagtatccactgatgctgcggaggtcaaagcttgcttacgggccctaagt
gagcccatcacactgtttggggaggggcctgcagagagacgagagcggttgaggaatatc
ctttccgttgtgggtccagatgccctgaagaaatctaagaaggacgatgacaaatccaaa
cgttcccaagaggagtgtcagcagacatggtaccatgagggaccatccactctgaaagaa
gctcggctctggttggccaaatactctctgcccagggccatgaagaggttagaaatcacc
aaagctaacagagagatcccagaatctacacgaacagtgcgaacacaagaacttcacaaa
acccttaggaaccttaataacttctgcagtcaaatcggtgatgaccggcctatttcattc
tgccagtttagcccgaactccaaaatgttggtgacggcatcttggagtggcctatgcaaa
ctgtggaatgttcctgactgcacccttgtccgtactcttcggggccacaacacccacgta
ggggccatctgttttcatcctcaggccaccgtgactctggaagactctgatgtcaacatg
gcctcctgtgctgcggacggctctgttaaactctggagtttggacagtgatgagcctgtg
gctgacatcgagggtcactctatgagggttgcaagagtggcctggcacccctctggacga
ttcctgggcaccacctgttatgataactcatggaggctgtgggacctggaggcccaggag
gagatcctacaccaggagggtcacagtaaaggagtacatgacctgcacttccaccctgat
gggtctttggccggcactggtggtctggattcatttggccgtgtttgggatcttcgtacc
gggcgctgtgtgatgttcctggagggccatcttaaagagatctacagcattgccttctct
cccaacggctaccacgcagcaacaggcagtggggacaacacctgtaaggtatgggatctg
cgtcacaggaagtgcatctataccatcccctcccatcagaacctggtgtcctctgtcaaa
ttccaacccaatgatggtcacttcctcctgactggggcctatgacaacacagccaaggtg
tggacccatccgggctggtccccactaaagaccctggccggtcacgaaggcaaagtgatg
ggagtggatatgtctcctgacggacagctcattgccacttgctcttatgaccgtaccttc
aagctctggatgtcagagtga
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