Esox lucius (northern pike): 105015814
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Entry
105015814 CDS
T04894
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
els
Esox lucius (northern pike)
Pathway
els03013
Nucleocytoplasmic transport
els03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105015814 (srrm1)
03015 mRNA surveillance pathway
105015814 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105015814 (srrm1)
03041 Spliceosome [BR:
els03041
]
105015814 (srrm1)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105015814 (srrm1)
Spliceosome [BR:
els03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
105015814 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
105015814
NCBI-ProteinID:
XP_010877535
UniProt:
A0A3P8XEG7
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Position
LG15:12069039..12077484
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AA seq
874 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFVFNQLEEKHPDSKMMQINLTGFLNGKNAREFMKDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLVSLKKIDDERKEKENRERESPRRRKSRSPSPRRRSPVKR
ERKRSHSRSPRRKPSPTSTPPPPVPAVTLVSVTLPQSSDEPQPEPDTSESVIPEPDIQEA
SSTSDVNPQTVVVVPDSVTGVKEPSPDTAPKKEERPKPRERDGRRDRPRHRSRSHSRSRR
RPRSRSRSYSPRRRPSPRRRMSPRRRSPPRRGPQGPRHRRSRSPVRRRRSRSPSSSGSSS
STSHSPHKKALKRTSITPPKKQPRGHAADPSLSPSRRRASRGSPSGKARRSVSPRARKGR
ASASPPRSAGSKKKPAARNDSPSPVPKPRHSEASESEGATGDSVQQRRQYRRQNRETSSD
SGSSSSSEEGGSKRPSGAPVARNGEVRRRRSHSPSPRRRHRDASPRKRCSPSPGGRRSPP
RRRRSPSPPPRRRSPTPPPRRRSPSPRRYSPPIQRRYSPTLGPQKRRLSGSPPPKRLSPI
PKRRPSRSPKRRSPPPQKRRTPPSSTSPPRHRRSPMLPSNRPGRDTRSPPTAHSTRLSPS
PANRGRAMRGSASPQGRFDTSSTSPPGGRRQASPSHGNRAIRRVSRTPEPRKNPRASQSP
LLLRRASSRSPSGSPKLGALKRPLPASGSPSPGRSASGSPSAPPAKKASSGSGSPSPNKN
SDTEAGGKKKKKKKEKKHKKEKKHKKHKKHKKEKSGVSAGDSQDNLGLEGDADSHPKKES
DSEVEECLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggatttttccgcggcacaagtgcagaacaagacaatcgtttcagcaataag
cagaagaaacttctgaagcagctgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctagaggtcatcaaaccttggattactcagcgagtaacggagatcctg
gggttcgaggatgatgttgtgatagaattcgtatttaaccagctggaagaaaagcatccg
gacagtaagatgatgcagatcaacctgacgggcttcctgaatggaaagaatgccagagag
ttcatgaaagacctgtggcctctgctgctcagcgcccaggacaacatcgccggtatcccc
tccgccttcctcgagcagaagaaagaggaaatcaaacagagacaaatcgagcaggagaag
ctcgtttctctaaagaagattgacgacgagagaaaggaaaaggaaaacagggagagggag
agtccgagacggaggaagtcaaggtcaccatctccacggcgccggtctcccgtgaagagg
gaaagaaagcgaagtcactcccgctccccgcggcgtaaacccagtcccaccagcacccct
ccaccaccagttccggctgtcactttggtcagtgttaccttaccacagagcagtgatgag
ccccagcctgagccagacacttcagagagtgttatacctgaaccagacattcaggaggcc
tcctctaccagtgacgtgaatccgcaaactgttgttgtggtaccagattctgtgacggga
gtcaaggaaccctctccggatacagctcctaaaaaggaggagaggcccaagccccgggaa
agggatgggaggagagacaggccccgtcaccgctctcgctcccattcccgctctcgcaga
cggcccaggtcgcgttccagatcctactccccacgccggaggccgagcccaaggagacgg
atgtcccctcgtcgtcggagtccccctagacgtggcccccaaggccccagacacaggcgc
agtcgctctccggtccgcaggcggcgctctcgctctccgtcatcctctggaagcagctcc
tccacatcccactcacctcataagaaagcgttgaagagaacatcgatcacacctcccaag
aaacagccccgcggccacgcggctgacccctccctcagcccatccagaagaagggcgtcc
agaggcagtccctctgggaaggccaggcgctccgtctccccccgggcacgaaagggccgg
gcctccgcctctccacccagatcagccggttcaaagaaaaaaccagcagcaaggaatgac
tcaccatctcctgttccaaaacccaggcattctgaggcgtctgaatcggagggagctacg
ggagattctgtgcaacagcgacgccagtatcgcaggcagaatcgggagacgtcttcagac
agtggatcctcgtcatcctcagaggaggggggttccaaaaggcccagtggggcgccagtg
gcgagaaatggagaagtcaggaggagacgcagtcactccccctctcccagaagacgacac
agagacgcctctcccagaaaaagatgttccccctcccctggaggacgtagatctccccca
cgccgtcgcagatctccttctcctccccccagacgcagatctcccactccccctcctcgt
agacgctccccttcccccaggaggtactctcccccgatccagcgccgctacagcccaact
ctgggcccacagaagagaaggctgtctggctctccccctccaaaacgtctctccccaatt
cccaagcgccgtccttccaggtcccctaagcgcaggagtccccctccccaaaagagacgc
acacctccctcctccacctctccacccagacataggaggagccccatgctcccatccaac
cggccaggccgggacactcgctcccctcctactgctcactcaacccgcctctccccctcc
cctgccaaccgtggccgagccatgcggggatcggctagtccacaggggcgcttcgacacc
tccagcacctctccacctggcgggaggcgccaggcgtcgccttcacatggcaatagggca
atccgcagggtgtcccggacaccagagccccgcaagaacccgagagcctctcagagcccc
ctgcttttgagaagagcgtcgtcaaggtcaccgtctggttcccctaaacttggagccctg
aagcgccccctcccagcctccggctccccctcaccaggccgctcggccagtggctctccc
tctgcccccccagctaagaaggccagcagtggctctggcagcccgtctcccaacaagaat
tctgacactgaggctggaggcaagaaaaagaagaagaagaaggagaagaaacataaaaag
gagaagaaacacaagaagcacaagaagcacaagaaggagaaaagtggtgtgagtgccgga
gacagccaggataacctggggttggagggggatgcagactcccacccaaaaaaggaatca
gacagtgaagtagaagagtgtctcgacgacctggaaaagcacctgagagagaaggctctg
cgttccatgaggaaagctggaaagctgtcccctccactgtcctga
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