Esox lucius (northern pike): 105015900
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Entry
105015900 CDS
T04894
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
els
Esox lucius (northern pike)
Pathway
els04140
Autophagy - animal
els04148
Efferocytosis
els05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
els00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105015900 (vps39)
04148 Efferocytosis
105015900 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
105015900 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
els04131
]
105015900 (vps39)
Membrane trafficking [BR:
els04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
105015900 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
UN_NPL4
Motif
Other DBs
NCBI-GeneID:
105015900
NCBI-ProteinID:
XP_028981357
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All DBs
Position
LG15:complement(7312567..7328106)
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AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWDDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLFVVSQYKILVSLLENNVHVHDLLTFQQITVVSKAKGATLFACDLQQSPSGE
ASLRLCVAVKKKLQMYYWKDREFYELQGDFTAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDAEGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPALSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTPSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMENLG
IIFEFSPWVLKMCPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIIHVWD
ETGPEFHNVLVQLYLERVQGLMKQYLNSLPDGVPAVAAGKEEGDLGEFRNKLLCFLEVST
SYEPGQLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILQDTRMAEEYCHSHYDKETE
GNRDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLKAALQVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCIITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRGVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgcttacgaaccggtccctatcttggagaaactgcctctccagattgactgt
cttgcggcctgggatgactggctgctcgttgggaccaaaccaggacaccttctcctttac
aggatcaaaaaggatgcaggcaccaacaggtttgaggtgactctggagaaatctaacaag
aacttctccaagaaaatccagcagctctttgtggtgtcccagtacaagattcttgtcagc
ctcctggagaacaacgtccatgtccatgaccttctgacctttcagcagataacagtggtc
tctaaggccaaaggggcaacactctttgcctgtgatctgcagcagtccccttcaggagag
gccagtctgaggctgtgtgttgcggtaaagaagaagcttcagatgtactattggaaggac
agagagttctatgagcttcagggggattttactgccccagacatccccaagtccatggcc
tggtgcgagaactctatatgcgtgggcttcaagagagactactacctgatccgaatggat
ggtcgtggttccataaaggagctgtttcccaccgggaagcagttggagccgctggtggcc
ccgttggctgatgggaaggtggctgtgggtcaggatgacctcacggtggtcctcaacgag
gaaggtgtctgcactcagaagtgtgccctcaactggaccgacatcccaatcgctatggag
caccagcccccctacatcatagctgtcctgcctcgctatgtagagatcaggacctttgaa
cccaggctgctagttcagagtgtggaactgcagagacctcgtttcatcacatcagctggg
cccaacatagtgtacgttgccagcaaccattttgtatggcgcctggtaccggtgtccatc
gccagccagatccgacagctcctacaggacaagcagtttgaactggccctgcagctggcg
aagatgaaagatgatgcggagggagataagaggcaacagattcaccacatccagaatctc
tacgcattcaatcttttctgtcagaagaggtttgatgactccatgcaagtgttcgccaag
ctcggcacagacccgacacacgtgattgggctgtaccctgacctgctgccctccgactac
cgcaagcagctgcactacccaaaccccctgcctgccctgtctggagcagagctggagaag
gctcatctggctctcatagactacctgacacagaaacgcagtcacctggtcaagcagctg
aatgactcggacccctccaccccctcccccctcatggaagggacgcccaccatcaagagc
cgaaagaaactgctgcagatcattgacaccacactgctcaagtgctacctgcacaccaat
gtggccctggtgtcccctctgttgcgtctggagaataaccactgtcacattgaggagagc
gagtacgtcctgaagaaagcccacaagtacagcgaactcatcatcctctacgagaagaag
ggcttgcaccagaaagccctgcaggttctgttggaccagtccaccaaggctaactcccct
ctgaagggccatgagaggactgtgcagtacctccagagactggggatggagaatctgggc
atcatctttgagttctctccctgggtgctgaaaatgtgtcctgaagatggactgaagatc
ttcacagaggacctgactgaggtggagacgttgccccgggacaaggttttgaacttcctg
aaggagggctttaaggagctcgcaatcccttacctggagcacatcatccacgtctgggac
gagaccgggccggagttccacaacgtcctcgtccagctgtacctggagagagtccagggc
ctcatgaagcagtacctcaactcccttcctgacggggtgccagcggtggctgctgggaag
gaggagggggacctgggggagttccggaacaagctgctgtgcttcctggaggtttccaca
agttatgaaccggggcagctgatcagcgacttccccttcgatggtctcttggaggagcgg
gcgttgctgctgggacggatggggaaacatgaacaggccctcttcatctatgtacacatc
ctgcaggacacacggatggcagaggagtattgccacagccattacgacaaagagaccgaa
ggaaaccgagatgtgtacctgtctctactgcgcatgtacctgtcccctcctgacgtccac
tgcctcggaccaatcaaaatggagctgtccgaaccacaagccaatctaaaagcagccctg
caggttctggagttgcatcacagcaagctgaataccaccaaggccatcaacctgctgcca
gccaacactcagataagagagatccgtgtgtttctggagagtgtcctggaggagaaggcc
cagaggaaacgatttgaccaggtcctcaagagtctactgcaggctgagttcctacgggtc
caggaggagcggatcttccaccagcaagtcaagtgcatcatcactgaggaaaagacttgc
agggtctgtaagaagaagatcggaaacagtgcctttgccaggtatcctaatggtgttgta
gtccactacttctgctgcaaggaccgaggagtgtgtcctacggagcagtga
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