Esox lucius (northern pike): 105017177
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Entry
105017177 CDS
T04894
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
els
Esox lucius (northern pike)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
DUF4992
Interfer-bind
fn3_2
DUF1194
Motif
Other DBs
NCBI-GeneID:
105017177
NCBI-ProteinID:
XP_010879876
LinkDB
All DBs
Position
LG17:20253249..20329163
Genome browser
AA seq
3142 aa
AA seq
DB search
MWIWVFPLAVLLSSGHQAEAQGRCNNVGAADIVFLVDGSSSIGRPNFLQVKAFMAGIIRP
FVSSVGPSGIRFGAVQYSDTSRVEFTFTTYLNGTELVSAVENLNYKGGNTRTGAGLKFVA
DNFFNPNSVRNVSKVFILITDGKSQDNVREPAQKLQSLGVEMFAVGIKSADQNELALIAS
PPQKNFIFFVGDFKLLNTLLSLVAPRVCSSSGGVYASDEAFSGPFNLQFTSQTSDSLRFR
WTSAGGPVSGYVVQYTPLSGLGQPITAELHQETVSGSQRSFVAKELKSGTDYLVTVIAQY
PNSVGEPVSAKSRTKSLAGVSGFRLAEAGFFSLSLIWDAPTSQIQGYRLTYGPRGQPTAQ
LLDQSLPADSTSVTLKKLLPDTEYVLTLFPLFPRNSAPSATLTSRTLRLEATQQLSVETL
SESSAQVLWRRVGGARAYRLVWGPFSGRNVDSVEVSGESEMTHTLLNLQPDTEYIVTVIA
LYEDSIEGPPATATFKIERLEQQVLNVANTGTSSIRLTWNLIQAARGYRLEWRQVQGGRE
QSQLLSRTTTSYDLTGLQPRTEYVITLFTLYEGREEATPVSTSSTVEQPVGRVSNLRVVE
SLGSTVRLGWTGVAGATEYRILIVNTEAQTEETRSIPGSQTTLDLKDLKEGVSYGVSVTA
LVGDYEGEQVTVNIKAEQALGKVTNLRVTNTNGRRLRIAWTGVPGATGYRFTWRQGNNAQ
QSIVLGPNTISHTVEGLEPGEAVVLGVAPMIGQRIGEVVTLTARTNGSNGSSSVSGLRVV
DVTSRRIHITWSPYSRATGYKITWRSGDGEEFSSTVAADRTSYIIGDLQEDSPYQVSVTT
MIGSREGRPTILNTKTESDQREVGTVTSLKVQESPGEVVMVTWVGVQGATAYRVAWKRTD
GGEVRSQLVGGDRTSFDLKQLDPGAQYEVQVIALVQKRQGTPVSVRVTTSGEPVAGDRVE
GLQVLEALPGLLRLSWRRMAGVTGYRLSWRSSLGEAESSLLLGRDETLYDLDGLRPGVSY
TVKLSAIYRDRESQAVSIIASTDSLQPVTGLRAEEVTQNSVLLRWVPLTAATGYVLRWRE
ERDTGPGQSIPLPGSSSSYRVTGLRLGLRYRFSLQPSFQREVGPETSVEERTVCVGGRLD
VVFLVPASRDRSRLAEPLLSLLSSAAGSLTTIGASDSQMGIVVYSARPKVWFLLNRHSNS
ETLLQEILSLPFEDGPGNAIGQALTFTRQFLLSSTAGRRPGVPGVVVIIADEKSSDNMTS
SARAVKASGVTVLAVGIGRADSEELRQAVTDGSTQNLLYVGDATQLNTLHADLADLLCGV
ARIPEGGPGTEPCTIQCPRGDRGERGEKGERGRDGADGRKGEPGRDGLPGREGPRGPEGR
QGPPGRSEDVSVGDRGEKGERGFPGLDGSPGLPGRPGTPGTGGLPGLQGVPGVRGDPGEP
GVAGTPGTKGDKGDRGEPGSAVSGGGLPGRKGEPGIPGIPGTSGRPGTDGAKGLMGPAGP
PGRDGSPGSPGTPGLSIKGDKGSTGERGPPGVGSGVAVKGEKGSPGSDGKPGPQGPRGLT
GPQGPKGETGESAEGLPGPPGKTGEPGDRGPRGPSGIIGIKGDRGPPGEPGSQGDRGERG
PAGLQGIRGETGLPGPTGPPGLRGLPGTNGLPGEKGSQGARGEPGRSGPGLGGKKGEQGE
PGPSGPEGPQGQKGEPAQKGEKGLPGAGTPGLAGPKGEQGDRGIPGLSGKSGSKGDPGEP
GERGETGRAGPAGKNGLSGKEGPKGDKGDEGTPGEPGLPGKSGERGLRGLQGQPGLLGEK
GDMGDPGEHGRNGSPGPVGPRGEKGAEGAQGPPGPPGTAVGTEQTIKRERGEKGDAGDPG
EHGAKGQKGEVGPPGPSGVRGLEGQRGPPGSRGDTGERGSPGEKGERGASGLDGRNGLDG
KPGAPGPAGLRGDPGKIGDPGRDGQPGLRGVQGPPGPVGPAGNTGPSGKAGEDGKPGAPG
KMGEDGLPGEDGKKGEKGEAGAPGRDGRDGLKGDRGLAGPAGPTGPSGPAGVPGTIGPPG
QVVYVKGAPVASIPGPQGPPGTPGVPGIPGTVGLRGEKGAMGAKGERGDQGDDGQPGRPG
TAVDVQKALSNIGIDVQELKAIVNRRDVPVKVEKAERGEKGDKGEVGPRGPAGIDGARGL
SGERGVKGEQGQPGPVGATGPTGRAIGEKGPVGPPGQAGEPGKPGIPGVPGRAGELGEAG
RPGDKGERGEKGDKGEPGKNGLAGSMGPPGPKGAAAEEGQDGLPGARGLPGVTGAKGEPG
PPGPSGPKGDRGIVGPRGDKGDRGPSGEQGRDGFQGTAGEPGKPGQDGKPGLPGFPGVLG
RPGNPGEPGIRGPTGPIGTNGPPGPPGVKGNQGLPGVGVQGPPGPQGSMGLPGPPGPPGA
VGPSGPPGLPGQTGEGGKPGVPGRDGIPGKEGTPGLPGKQGIAGPMGPAGLKGEQGDSGP
PGKAVAGPPGVKGEQGPPGVTLPGTAGEIGLPGLRGERGDRGPTGIKGDRGVAGEDGEPG
EDGARGPPGPKGDKGERGIGLAGPPGQPGPQGLKGDTGLPGSAGPPGPSGVSGTPGLAGL
RGENGNPGPPGPLGSRGIQGFPGEAGTPGAPGPPGSPGLAGPPGIAGGKGDKGATGIGVP
GLRGERGDPGPRGEEGRAGLDGERGLTGSPGSRGERGEKGEFGPQGDKGEKGDTLLVIGP
TGEKGNKGETGDRGPKGVQGEKGLKGSDGPAGEQGLRGEPGDRGSTGFQGARGPGGQKGE
AGQPGVPGEPGKPGKDGMPGFRGEKGDVGITGMRGIKGDRGSKGMCGSDGLKGEKGDAGI
HGRAGLPGRKGEQGDLGPPGPTGTAGKEGLIGPKGDRGIDGVLGHKGAQGEKGERGPPGV
PGPPGPRGVDGVPGLTGSQGPAGVKGPEGLQGQKGERGPAGPAMTGPRGIPGIPGERGEQ
GEMGPDGAKGDRGEPGLTEDEIRTYVRTEMSQHCACGGMIVPETLPNTRALPAPEKQLAR
QGKEGKDGRELRVVVNTNDPDYEHIYSIESYDDPMAMGQSIHLSPTGDQSDGKTVTVDPL
NAKRPKREVKGEAPVDPCVLPLEEGSCGRFTLRWYFNSQVKACRPFIYSGCGGNANRFLQ
QESCEERCLLEDTGALPLKKER
NT seq
9429 nt
NT seq
+upstream
nt +downstream
nt
atgtggatctgggttttcccgcttgctgtcctgctgtcctcagggcaccaggctgaagcc
caaggcaggtgtaacaatgttggagcagcagacatcgtgttcctggtggacggctcgtcc
agtatcggcaggcccaacttcctgcaggtcaaggccttcatggctggcatcatacggccg
ttcgtcagttctgtgggcccatctgggatccgcttcggtgccgtgcagtacagcgacacc
tctagggtggagttcacctttaccacctacttgaatggcacagagctggtcagcgctgtg
gagaacctcaactacaaggggggcaacactcgtactggcgccggcctcaaatttgtcgcg
gacaacttcttcaatccaaactcagtccggaacgtctctaaggtctttatattgatcaca
gatgggaagtctcaggacaatgtgagggagcctgctcagaagctgcagagtctgggagtg
gagatgtttgctgtgggtataaagagtgccgaccagaatgaactggctctgatagcctct
ccgcctcagaaaaacttcattttttttgtgggggacttcaagctgctcaacacattgctg
tctctggtggctccacgagtgtgttccagctctgggggagtgtatgctagcgatgaggcc
ttctccggtcctttcaacctccagttcacaagtcagacctcggattcgctcaggttccgg
tggacttccgccggggggcctgtgagtggctacgtggtgcagtacacgcccctgtctggc
ctggggcagccaatcacagcagagctgcatcaggagactgtgtctggaagtcagaggagc
tttgtggccaaagagctgaagtcagggacagactaccttgtgacagtgattgcccagtac
cccaacagtgtgggagagcctgtttctgctaagtcacgaactaagtctctagcgggggtg
tctggtttccgcctggcggaggccgggttcttctctctctctctgatctgggatgccccc
acctcacagatccagggctaccgactcacctatggacccagaggtcagcctactgcccag
ctgttggatcagtctctgcctgctgattccacctccgtcaccctgaagaagctcctccca
gacacagagtatgttctcaccctcttcccactcttcccccgaaactctgccccctccgcc
accctcacctcacgcacattacgcctggaggcgacccagcagctgtcagtagagacattg
tcagaaagtagcgcccaggtcctgtggagaagagtgggtggagccagggcctatagactg
gtctggggaccattctcaggtcgtaatgtggattctgtggaagtgtctggagaaagtgag
atgacacacacccttttgaacctgcagccagacacggagtacattgtcacagtcatcgcc
ctctatgaggacagcatagagggtcctcctgccactgctacattcaagatagagcgtctg
gagcagcaggtactgaatgtagccaacactggaacctcctcaatccgccttacctggaac
ctcatccaggcagccaggggctaccgtctggagtggagacaggtccaaggtggccgagag
cagagtcagttgttgtccaggaccaccactagctatgacctgacagggctgcagcccaga
acggagtatgtcatcaccttgttcaccctgtacgagggtcgagaggaggccacccctgtc
tccacctcttctacagtggagcagcccgtgggaagggtgtccaacctgcgagtggtggag
tccctcggtagcacggtgaggctgggatggacaggggttgccggggccaccgagtaccgt
atcctcatagtcaatactgaagcacaaactgaggagacccgcagtatccctggaagccag
acgacccttgaccttaaggatctgaaggagggcgtgtcttatggggtcagcgtgacagct
ttagtgggagactatgaaggggaacaagtcactgtcaacattaaagcagaacaagcgttg
gggaaagtgactaacctgcgtgtgacaaacaccaatggtcggcgtctccggatcgcctgg
acaggagttcctggggctacagggtacaggttcacttggagacaaggcaacaatgctcag
cagtccattgttctgggaccaaataccatctcccacacagtggaggggctggagcccggc
gaggctgtggtcctgggtgtagcgcctatgattggccagcgcatcggggaggtggtcact
ctcacagccaggaccaatgggagcaatggctcaagctcagttagcggcctgcgtgtcgtt
gatgtcacctccaggaggatacacatcacatggtcaccctactccagggcgacaggctac
aagatcacctggcgcagtggggatggggaagagttctccagcactgtggccgctgatcgc
acctcctacatcatcggagaccttcaggaagactccccctaccaggtgtccgtcactact
atgattggctctagagaaggacgccccaccatcttgaacaccaaaacagagtcagaccag
agagaggtgggaaccgtgacctcactcaaagtccaggagtcccctggtgaagttgtcatg
gtaacatgggtgggcgtgcaaggagcgacagcctatcgtgtggcttggaagagaactgat
ggtggggaggtgaggagccagctggtgggtggtgaccggacatcgtttgacctgaagcag
ctggacccgggggctcagtatgaggtgcaggttatagccctggtccagaagagacaggga
accccagtctctgtcagagtcaccacatccggggaaccggttgctggagaccgcgttgag
ggcctccaggtgctggaggctctcccaggcttgctgcgtctcagctggagacgtatggcc
ggggtcacagggtaccgcctcagctggagatcatccctgggcgaggctgaatcaagtctc
ctgttaggtcgagatgagaccttgtacgacctggatggtctgcggcctggggtgagctac
actgtgaaactgagcgccatctacagggacagagagagtcaagctgtcagtatcattgcc
tccacagattccttacagcctgtgacgggtctgcgagcagaggaggttacccagaattct
gttttgctgcgctgggttccactgactgccgcgacgggatacgtcctccgttggagagag
gagagagacactgggccaggtcagtccatcccacttcctgggtcgtccagctcctacagg
gtgacaggactgcgtctgggcctgaggtaccgcttcagcctgcagccctccttccagagg
gaggtgggcccggagacctcagtggaagaacgcaccgtgtgtgttggtggtcgtctggac
gtggtgttcctggtcccagcctccagggatcgtagtagattagctgagcctctgctctcc
cttctttccagtgcagccggctccctcaccactattggagccagtgactcacagatggga
attgtggtgtacagtgcccgacccaaggtgtggttcctgctcaatcgccacagcaacagt
gaaactctgcttcaggaaatcctttcgctgccatttgaagatggcccaggaaatgctata
ggccaggctttgaccttcaccagacagttccttctcagctccacagctggtcggagacca
ggagttcctggcgtcgtggtgatcattgcggatgaaaaatcctcggacaacatgacatcc
tcagccagggctgtcaaagcgtcaggtgtgacggtcctggccgtcggtatcggacgggcc
gactcggaggagctgcgccaagcggtgacagatggcagcacccagaacctcctctatgtt
ggtgatgccacccaactgaacaccctccatgccgacctggctgacctgctgtgtggcgtg
gccaggatcccagaggggggtcctgggaccgagccctgtactatacagtgtccacggggg
gaccgaggagagcggggagaaaagggagaacgaggaagagatggtgctgatggacggaaa
ggagagcctggtcgcgatgggttgcctggcagggagggccccagggggccagagggccgt
cagggaccacctggccgaagtgaggacgtctccgtgggggacagaggggagaaaggggag
agggggttccctggcctggatgggagtccagggttgccaggacgaccaggaacaccgggc
accggaggactgccgggtttacagggggttcctggtgttagaggagaccctggtgagcct
ggggttgcaggaacaccagggacaaagggtgacaagggtgacaggggtgagccagggtcc
gctgtttcaggaggaggtcttcctgggagaaagggtgaaccagggatccctggaatacca
ggtacatcagggcgtccggggactgatggggccaagggcttaatgggacctgcagggcca
ccaggacgggacggtagccccgggtcaccaggcacacctggcctctccataaagggagac
aagggcagcacaggagagagggggcctccaggagtggggagtggtgtggccgtaaagggg
gagaaaggatcgccggggtctgatggtaaaccaggacctcagggccccagaggacttaca
ggaccacaaggaccaaaaggagaaacgggggagagtgcagaggggttgcctggaccacct
gggaagactggagagcctggtgatcgggggcctcgtgggccttctgggatcattgggatt
aagggagaccgaggtcctccaggtgagcctggatcacaaggtgacagaggcgagagagga
cctgctggcttgcaagggatcaggggggagacaggactgcccggccccacagggcctcca
ggcctcaggggtttgcctggcaccaatggactcccaggggaaaagggcagccagggggca
cggggagaacctggccgcagcggtccaggcttaggtggaaagaaaggtgaacagggtgag
ccgggcccgtctggtccagaggggccccagggccagaaaggagaaccggcccagaaaggt
gaaaaaggtctcccgggtgctggcactcctggcctggctggacccaaaggagagcaaggg
gatcggggaatccctggcttatctggaaaatcaggaagtaagggagacccaggtgaacca
ggagagagaggggaaactggacgcgctggacctgcaggaaagaatggcctctcagggaaa
gagggacctaaaggagacaagggcgatgaaggcactcctggggagccaggcctaccgggg
aagtcaggggaacgaggactgaggggcctgcaaggtcagcctggactactaggcgagaag
ggagatatgggagatcccggagagcatggacgcaatggcagcccaggaccggttggacca
aggggagaaaaaggagcagagggagctcaagggcccccaggacctcccgggactgcggtt
ggtacagagcaaacaattaaaagagaaagaggagagaagggggatgctggtgaccctgga
gagcatggtgccaaaggtcagaagggcgaggtagggcccccagggccctcaggtgtccga
ggtcttgaaggacagcgtggacctccagggtcaagaggtgacacaggagagcggggaagc
cccggagagaagggagagagaggtgcctctgggctggatggacgcaacggtttagatggc
aaaccaggagctcctggaccggctggcctgaggggagacccagggaaaataggggatcca
ggaagagatggacaaccaggactaagaggtgtacagggtcctccagggcccgtcggacca
gcaggaaatacaggtccatctggcaaagcaggagaagatggaaaaccaggggctcctggg
aaaatgggagaagatggcttaccaggggaagatggcaaaaagggtgaaaaaggagaggcg
ggggctcccggaagagacggccgtgacgggctgaagggggaccgaggccttgctgggcct
gctgggccaactggtccatctggacccgcaggtgtccctggcaccattggacctccagga
caggtggtttatgtgaaaggagctccagtagcatctatccctggtcctcaggggcctcca
ggaaccccaggtgttcctggaataccagggactgtaggtctcagaggggagaaaggagca
atgggcgcaaaaggggaaaggggtgaccaaggggatgatggccagccgggcaggccagga
acagcagtggatgtgcagaaggccctctctaacattgggattgatgtgcaagaactgaag
gcaatcgtgaataggagggatgtgccagtcaaggtggaaaaggctgagaggggcgaaaaa
ggagacaagggagaggttggaccgagaggaccagcagggatagacggtgcccgtgggctg
tctggggagaggggtgtgaagggagagcagggacaaccgggaccggtgggggccacagga
cccacagggagggccatcggagagaagggcccagtggggcccccgggacaggctggagaa
ccaggaaaacctggaatacctggagtgccagggagggctggagaactgggagaggctgga
cgacccggagacaagggggagagaggagagaagggggacaaaggagagcctgggaaaaac
gggcttgcaggatcaatgggcccacccggaccaaagggtgctgcggcagaagagggtcag
gatggacttcctggagcaagggggctccccggtgtgacaggagcaaagggagagcctggt
cctccaggaccgtcaggacccaaaggagacagaggtattgttgggccgcgtggggataaa
ggtgaccggggtccatcgggagagcagggacgagacggttttcaaggaacagcaggagaa
cctgggaaacctggacaggatgggaagccgggcctgcctgggttccctggcgtgctgggc
agaccgggaaaccctggagaacctggaattagaggaccaactggtccgattggtaccaat
gggcctccaggtccaccaggggtaaagggtaatcaaggattgcctggagtcggcgttcag
ggaccccctggtccccaaggcagcatgggactgccaggacctccgggtcctcctggagcc
gtgggtccgtcagggcctcccggtctaccagggcagacgggggaggggggtaagccaggg
gtccctgggagagatgggatacctggaaaagaggggacaccagggttgccagggaaacag
ggtatcgctgggccaatgggccccgctgggttgaagggagagcagggggacagcggcccc
ccagggaaggctgtagcaggaccccctggtgtgaagggagaacagggacctcctggtgtg
accttacctgggacggcaggagagataggcctgccagggctacggggtgagaggggagat
aggggcccgacaggcatcaaaggggaccggggtgttgctggtgaagatggggagcctgga
gaagatggcgctagaggaccaccagggccgaaaggtgacaagggagagagaggcatcggg
ctggcagggcctcctggtcagccgggacctcaagggttgaagggtgacactggactccct
ggctcagcaggccctccaggacccagtggtgtttctggaacccctggtctggctggactg
agaggagagaatggaaacccaggacctcctggacctttaggatccaggggtatccaaggc
tttcctggtgaggctgggactcctggagctcctggcccccccggatcccctggactggct
ggtccaccaggcattgctggaggtaaaggggacaagggagcgactggaataggagtacct
ggattgagaggagaaagaggagacccagggcccaggggtgaggagggtcgagcgggtctg
gatggggagagaggactaacgggttctccaggtagcagaggagagaggggagagaagggt
gaatttgggccgcaaggtgacaaaggagaaaagggcgatactcttctggtgattggccct
actggagagaaaggcaacaaaggcgaaacgggggaccgcggccccaaaggtgtgcagggg
gagaagggcttgaaaggcagtgatggcccagctggggagcagggcctgagaggtgagcca
ggggacaggggctccactgggttccagggggcccggggtccaggaggacagaagggtgag
gcgggccaacctggcgtacctggagaacccggcaaacccggaaaagatggaatgccaggc
tttagaggggagaagggagatgtggggataactggaatgcgtggaattaagggcgaccga
ggatcaaagggaatgtgtggatcggacggacttaaaggagagaagggagacgctggaatc
catgggcgtgcagggttgcctggaaggaaaggtgaacagggagatttagggcctcccggg
cccactggaactgcagggaaggagggactgatcggccccaagggtgaccgtggcatcgat
ggagtcctgggacataaaggggctcagggagagaagggcgaaaggggccccccaggtgtc
cccggccccccaggccccagaggagtggatggggtccctggacttacagggtctcaggga
cctgctggagttaaaggccctgaaggcctacagggacagaagggggagcgagggcctgct
ggtcctgccatgactggtccacgtggtatcccaggtatacctggggaacggggcgagcag
ggagagatgggaccagatggagccaagggagacagaggagagccaggcttgacggaggat
gagattcgtacatatgtccgcacagaaatgagtcagcactgtgcttgtggaggtatgatt
gtcccagaaacactgcctaacaccagggcacttcctgctccagagaaacagctggcccgg
cagggcaaggagggcaaggatggtcgtgagctgcgtgtagtggtgaacaccaacgaccca
gattatgaacacatctactctatagagagctatgatgaccccatggccatgggacagagc
atccaccttagccccactggtgatcaaagtgatggtaagacagtcactgttgaccctctg
aatgcaaagaggcccaagagagaggttaaaggggaagctccagtggacccgtgtgtgtta
cccctggaggaaggcagctgtgggaggtttactctgcgttggtactttaacagccaggtg
aaagcctgcagaccctttatctacagcggctgtggggggaacgccaaccgcttcctccag
caggagtcctgtgaggaacgctgcctcctggaggacacaggtgcacttcctttgaagaag
gagcgatga
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integrated database retrieval system
