Esox lucius (northern pike): 105018454
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Entry
105018454 CDS
T04894
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
els
Esox lucius (northern pike)
Pathway
els03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105018454 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105018454 (edc4)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105018454 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
105018454 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_Prp19
Beta-prop_EDC4L
WDR55
Motif
Other DBs
NCBI-GeneID:
105018454
NCBI-ProteinID:
XP_010882186
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All DBs
Position
LG19:complement(25618663..25644657)
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AA seq
1418 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPANNVDSSPCENQRKTSYNGEFNGLLGADILGAGDR
SAMAESTGPNSENINSQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNSYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTHLGCVDEAGNLVIWRLTCHSSKIHDQVVIHIRRPEDTPLNSNRRLIWCP
FIQDDNDENPEEASQNLALLHEDRVEVWDLENLRSNNSTWPVDATDLKEGVITIKGHTER
VSEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGGPLSCL
LFCDNHKKQDPEVPFWRFLITGANQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKA
SLDLSAECLILSDVQRKVLYVMELSQDQDKGRAGFTAVSEFLLTHPVLSFGVQDVSHSRL
RHTEVLPQDEESESMTAEGNQGPLESRAGIQIKLYCVHTKSLQDVQIWFQPNFGTSTSMF
LPHSDSNDGYGFSDNLTDMSVEGLSSDKESGCGSQNDLCKISALPAPADFLTPSGAAAMP
KLMTPDAFMTPSASVPASPASSASSLTIVTAMSSNSESGASDVIVCRGGEEPTQSPKMSV
ESSSNSSLTLSASTSSPRASSILISGLGDNMPVLSSPNPPLSLDPQVIEPILIQQASPTR
ARSPDVISSASTAMSQDIPEIASETLQRGLGGVSGADSRDPLPALHADSMASAASALHHL
SPRNQNSSDHGHLPLELGAGAGAVEAEQRLSNTPSLLENALSQENAAAGSSDNNVSHPWP
AAPDITRETRNSLRDNGLGDCSRDEMKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDE
VASLASSSGNCGTRSSSHRLPVKEWKSSPRGSPKLKRKSKKDEGDVSQSRQPEHHHHHHQ
PVNPEAQEELLMLLRNQQRGLEELRQSQLELLQRVTGHMDTVQSFILARVEHVMVSQQEH
EQRRMERILTEDHSRNQQLQEHLSQQLAQTLSNTLCTRLDKTLREEMKKTVPPTITKSLE
PVTAQMSNTIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQS
IVLPVFERGCQSMFQQINDSFKQGTHEYIQQLETHVKNRKQHEQDTRDPMIAQLQQMIDA
FQKSTDQLAATVTASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSLAMKEQQAAVTS
SIMQAMRSAASTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLNLVLYVCETM
DSQQVFGQHPCPLIQPVLLSLIQQLSTNLATRTELKISYLEDAVMNLDHGDPVTRDHMSA
VLSQVRQKLFQFLQQDPHSTLSKRARRLMMMLQGLVNH
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggatcgacccgcgaacaacgtcgactcttctccatgtgagaaccaaagaaaaacc
tcttacaatggtgaatttaatggacttctgggagcagacattttgggtgctggcgacagg
tcagccatggctgaatccacaggccctaattcagagaacatcaactcccaagagtgtcag
ataatctgtctctctggggatgatggctccacttgcattcccatcacatcaaacaatgtt
gaaatagtggcaagtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggta
aaaatccagcctgtcgccaagtatgactgggagcacaaatattactacggcaacctgatt
gcagtctctaactcatacctggcatatgccatccgaggagcaaacaaccaagcgatgatc
cgtgtgttaagcctgggctcggcagagcgcaccctgttgaagggcttcactggtgccgtc
acagacctggccttcgcacatctggactccacacatctgggatgtgtcgacgaggctggc
aacctggtcatctggaggctcacctgccacagcagcaaaatccatgatcaagtggtcatc
catatccggaggcctgaagatacgcctctgaactccaatcggagactgatctggtgtccc
ttcatccaagatgacaatgatgagaaccctgaggaggccagccagaacctggccttgttg
catgaagaccgggttgaagtgtgggatctggagaatcttcgcagcaacaacagcacctgg
ccagtagatgccactgacctcaaggagggagttataaccattaaaggtcatacagagcgt
gtcagtgaaggtgcactgtctccagacgggacagtcctggccacagccagtcatgacgga
tatgtaaagttctggcaaatctatatagaaggacaggaccagccaagtcctctccccggc
ttcttccacagatgtctgcatgagtggcagcctcacaacgggggccccctctcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagaggttcccttctggcgcttcctgatt
actggagctaatcagaaccaggagttgaagatgtggtgcacggtgtcgtggacctgcctt
cagaccatcaggttttcccccgacccgttcaactcctccgtcctgcccagtttgaaggcc
agcctggacttgtctgcagagtgcctcatcctcagcgacgtacagaggaaggtgttgtat
gtgatggagttgtctcaagaccaggacaagggccgggccggcttcactgccgtgtcggag
ttcctgctcactcacccggtgctcagctttggtgttcaggatgtcagccacagtcgcctg
cgccacaccgaggtcctcccccaagacgaggagagtgagagcatgactgcagaaggcaat
cagggaccattggagtccagagctgggatccaaatcaagctatactgtgttcacacgaag
tctcttcaagacgtgcaaatctggtttcagccaaacttcggcacgagtacctccatgttc
ctgcctcactctgactcaaacgacggttatggtttttccgataacctgacggacatgagc
gtggaaggtttgagctctgacaaggagtccggctgtggctcccaaaacgatctttgcaag
atttccgcactccctgctcctgccgacttcctgacgccctccggcgcggctgccatgccc
aagctcatgacccctgacgcgttcatgacccccagtgcttcggtaccagcctccccggcc
agcagcgccagcagcctgaccatagtgacagccatgagcagcaactctgaaagtggcgcc
agcgatgtcattgtctgcaggggaggcgaggagcccacccagagccccaagatgtctgtg
gagagcagcagcaacagcagcctgactcttagtgccagcaccagcagtcccagagccagc
tccattctcatctccgggctgggcgacaacatgccggtcctttcctctccaaaccccccc
ctctcactggaccctcaggtcattgagcccatactgatccagcaagcctctcctacccgg
gcgcgctctccggatgtcatctcgtccgcctctacggccatgtcccaagacatcccggag
atagcctccgagaccctgcagcgaggcctggggggtgtgtccggagctgattcccgagac
cctctcccagccctccacgcggacagcatggcctctgcagcctcagcccttcaccacctc
tctccgcggaaccagaacagctctgaccacggccacctgcccctggagctgggtgccgga
gcgggagccgtggaggccgagcagaggctcagcaacaccccttcgttactggagaacgcc
ctgtctcaggagaatgcagccgctgggtcctcagacaacaacgtgagccacccctggcct
gcagctccagacatcacacgggagacacgcaacagcctgcgggacaatggcctgggtgac
tgctcgagggacgaaatgaaggaccgacacatgtcgtcgccataccatcgacgtacctac
cacttaacccagaatgatagtcaggacgccagtgcagaacagagtgaccatgacgacgag
gtggccagtctagcatcgtcctctgggaactgtggcaccagatcttcttctcacagactg
cccgtcaaagagtggaagtcttctcccaggggttcccccaaactaaaaaggaagagtaaa
aaagatgagggggatgtttctcagtcccggcagcctgagcaccaccatcaccatcatcag
ccggtgaaccccgaggcccaggaagagctgctgatgctgttgcgtaaccagcagaggggg
ctggaggaactccgtcagagtcagctggagttgctgcagagggtgactggccacatggac
actgtgcagagctttatccttgcccgtgtggagcatgtcatggtcagccagcaggagcac
gaacagaggagaatggagaggatactaacagaagaccacagtcgtaaccagcagctccag
gagcatctctcccagcagctggctcagactctcagcaacaccctgtgtacccggctggac
aagactctccgagaggagatgaagaagaccgttcctcctactatcactaagagtctggag
cctgttactgcccagatgagtaacacgatcgctgctaagctgacggctgtggaggcggcc
ctgaaggagaatgttagcaaagttgtcaagtcaaagaacaccacagatgccattggccgt
gcagctgccgaggccatgcagggaccaattcaggctgcctacaaggatgcattccaaagc
atagtgctgcctgtgtttgagagaggctgccagtccatgttccagcagatcaatgacagc
ttcaagcagggcacccatgagtatatccagcaactggagacccatgtgaagaacaggaag
cagcatgagcaggatacccgggaccctatgatagcccagctgcagcagatgattgacgcg
ttccagaagtcgacagatcagctggcggccaccgtcacagccagtgttcgctctgaggtc
cagcaccagctccacatgacggtgggaaacctgcaggactccatcctgactcaggttcag
cgcatcgtgaagggggaggtgagcttggccatgaaggaacagcaggcggcggtgacctcc
agcatcatgcaggccatgcgctctgctgccagcacccctgtacccactgcacacctggac
taccaggcccagcaggccagcatccttcagctcctgcagcagggacagctgaaccaggcc
ttccaacaggccctgtctgcctctgacctcaacctggttctctacgtgtgtgagaccatg
gactcccagcaggtgtttggccaacatccctgccccctcatccagcccgtgctgctgtcc
ctcatccagcagctatccactaacctggccactcgcacggagctcaagatcagttacctg
gaggacgctgtgatgaacctggaccatggggatccggtgacgagggaccacatgagtgca
gtgctgtcccaggtcagacagaagctgttccagttcctgcagcaggacccacacagtact
ctgagcaagagagcccggcgcctgatgatgatgctccagggcctggtcaatcattag
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integrated database retrieval system
