Esox lucius (northern pike): 105018744
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Entry
105018744 CDS
T04894
Symbol
col5a2
Name
(RefSeq) collagen alpha-2(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
els
Esox lucius (northern pike)
Pathway
els04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
els00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105018744 (col5a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105018744 (col5a2)
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105018744 (col5a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
105018744
NCBI-ProteinID:
XP_010882709
LinkDB
All DBs
Position
LG20:10240694..10287495
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AA seq
1494 aa
AA seq
DB search
MKRFVHSRIWLFLVVSVALVLFVKCQEENNGDDCMVDGQVYTNRDIWKPEPCRICVCDNS
VVLCDEIQCDEVANCEKVVIPEGECCPVCQTDAGTTDRVDPRPDGGRVYRGQKGEPGDVP
LVTGIRGRPGPTGPPGSPGFRGERGQKGRPGLRGPAGYDGEPGVPGNPGEPGPAGNQGPP
GGLGAQMAGGFGDEKSAGQTAMVPGTRGDAGARGPPGPSGSPGHSGPQGPTGEVGDPGHM
GPSGQRGPEGPAGKAGEDGEAGKPGNAGEKGFPGSAGARGFPGTPGPPGLKGHRGHAGPM
GLRGETGAVGSKGGLGPTGPIGALGPMGPVGMPGERGRVGASGIPGTKGPPGNVGKPGPM
GPLGINGPPGYPGIPGMKGQPGATGVRGPEGPQGQRGETGHQGRAGAVGQQGPSGTDGGR
GTKGPVGSMGVQGPGGHLGPAGPPGPQGSTGQPGIKGQLGDVGVPGYKGEAGPKGEPGPP
GSQGVIGPQGEEGKRGPRGDSGSLGPPGPVGERGSPGNRGFPGADGLPGPKGAVGDRGPS
GISGPKGSGGDPGRTGEPGLPGARGLTGTPGVQGAEGKPGPLGPAGEDGRPGPAGSIGTR
GPAGTMGTTGPKGFNGDPGKTGEQGSPGVAGQRGPPGKDGEVGPSGPAGPPGVAGERGEQ
GPPGVNGFQGLPGPPGPPGESGKPGDLGIAGEGGAVGQTGPRGERGIPGERGELGSLGVA
GPKGIPGAPGPDGPKGSPGPSGGLGDLGPPGLQGMPGERGISGPPGPKGDRGSGGEKGSE
GTAGNDGARGLPGSLGPPGPHGPSGEKGEPGPKGPPGPHGSRAMPGSRGEPGPIGPVGFA
GPPGPDGQPGVKGEPGEPGQKGDAGSPGPQGLSGSHGPPGIVGVAGLKGGRGTQGAPGPT
GFPGSPGRVGPPGPNGPIGEPGPLGSPGKEGPPGLRGENGSPGRQGERGPPGAAGGPGDK
GDSGEDGPTGPDGPPGPAGTTGQRGIVGLPGQRGERGMVGLPGPAGPPGKQGSTGATGDK
GPPGPVGSPGANGPRGDPGPDGPAGSDGPTGKDGVIGLRGDRGDPGPEGLLGTTGQPGTP
GPVGATGGPGKRGDAGSRGPNGPPGSAGKRGLTGPQGPRGDKGDLGDHGERGQKGHRGFT
GLQGLPGSPGTPGEQGAAGIVGPNGQRGPSGPVGPPGKEGYIGQPGPMGQPGTRGLSGEI
GPEGPPGEPGPTGPPGPPGPPTAAMDDLFVDIQDYDSGPPPPPEFSEDEALPNSNATQPL
DPGVQATLKALSSQIDSMKSPDGSRKHPARTCQDLKQCYPLKKTGEYWVDPNQGSSEDAI
KVNCNMETGETCISANPASIPRKVWWSTSRNKPVWFGADINRGKQFTYGNKDQPANSVTV
QMTFIRLLSKEASQTVTYHCKNTVGYKDEATGNLKKAVILKGSNDLELKAEGNSRFRYTV
TEDSCAKSNGKWGKTVFEYRTQKTARLPIMDMAPVDIGGSDQEFGIDIGPVCFL
NT seq
4485 nt
NT seq
+upstream
nt +downstream
nt
atgaagagatttgtgcattcaaggatttggctttttttggttgtgtctgtggctctggtt
ttatttgtgaaatgtcaagaggaaaacaatggagatgactgtatggttgacggccaggtg
tacaccaaccgggacatctggaagccggagccgtgtcggatatgcgtgtgtgacaacagc
gtagtcctgtgtgacgagatccagtgcgacgaggtggccaactgtgagaaggtggtcata
cccgagggcgagtgctgtcctgtttgccagacagacgccggcaccaccgaccgcgtcgac
ccccgacccgacggcggcagggtttacaggggtcagaaaggagaaccgggtgatgtaccg
ctagtgactgggatcagaggtcgtcctgggcccacggggcctcccggctcaccaggattt
agaggggagagaggacagaaaggaagacctgggctgcgtggaccggcgggctatgatggt
gaaccgggagtgccaggaaatccaggagaaccaggtcctgcaggaaaccagggtccgccg
ggaggactgggagctcaaatggctggaggctttggggatgagaaatcagctggacaaaca
gccatggttccaggaacaaggggagatgcaggtgcaagaggacctcctgggccaagtgga
tcgcctggccactctggacctcaaggacccaccggggaagttggtgatccaggtcacatg
ggtccatctggacaaagaggacctgaaggaccagctggaaaagcgggtgaagatggtgaa
gcaggaaaaccaggaaatgcaggagagaagggattccctggatcagctggagctcgaggg
tttccaggaacacctgggccaccaggattaaaaggtcacagaggtcacgcaggtccaatg
ggtttaagaggagaaacgggagctgtaggatcaaagggtggattgggtcccactggtcca
attggcgcactgggccctatgggccctgtagggatgcctggggagagagggcgcgtaggt
gcgagtggtataccggggacgaaaggccctcccgggaacgttggtaaaccaggtccaatg
ggtccattaggaatcaatggtcccccaggatatccaggaattccaggaatgaagggccag
cctggtgccacaggcgtgcgaggccccgagggtccccagggccagaggggggaaactgga
caccaaggcagggcaggagcagttggccaacaaggtccttcaggaacggacggaggccgt
ggtactaaggggccggtgggtagcatgggtgtgcagggtccagggggtcaccttggcccc
gctggtccaccaggacctcagggaagcactggacagcctgggatcaaaggtcaactggga
gacgtcggtgttcctggttacaaaggagaggccggacccaaaggagaacctggtccccca
ggttcccaaggagttatcgggccccagggcgaggaggggaagaggggacctcgtggtgac
tctggctcactaggacctccgggacctgttggcgagaggggatctcctggtaacagaggt
tttcctggtgctgatggactacccggacctaagggcgcagtaggagatcgtggaccttct
ggcatatctgggcctaaaggttcagggggggatcccggccgcactggcgaacctggcctt
ccaggggcaaggggtctgaccggaactccaggagtccaaggagctgaaggaaagccagga
ccactgggtccagcaggagaagatggccgtccagggccagcagggtctataggaaccaga
ggtcccgcaggaaccatgggaaccacagggccaaagggcttcaatggagacccaggaaag
accggtgaacaaggatctccgggtgtggcaggacaaaggggtcctcctgggaaagacgga
gaagtgggaccttctggacctgctgggcctccgggggttgcaggtgaaagaggtgaacag
ggaccgcctggagtgaacggtttccagggattacccggcccacctggcccacctggagag
tcaggaaaaccaggtgatttgggtatcgccggagagggaggagctgttggtcaaactgga
ccgcggggagagcgtggaatcccaggagagagaggagaactcggatctctgggtgtggct
ggaccaaaaggaatccctggagcaccaggacccgatggaccaaagggtagtcctggtccc
tctggtggactcggtgacctaggccctcctggacttcaagggatgcctggcgagagaggg
atctcaggtccacctggacctaaaggtgacagagggtctggtggagaaaagggatctgag
ggtacagctggaaacgatggcgcaagaggtcttcctggctctcttggcccaccaggaccc
catggacccagtggtgaaaagggagaacctggacctaaaggcccacctggtcctcacgga
tcgagagcaatgcctggatcccgtggtgaacctggtccaattggtcccgtgggatttgct
ggaccccctggtcccgacggtcaaccaggtgtcaagggggagcctggagagcctggtcag
aagggtgacgctggttctccagggcctcaaggcttgtccgggtcccacggacctcctggt
atcgttggtgtggccggactgaagggtggcagaggaacccagggagcccctggcccgact
ggtttccctggatctccaggcagggttggaccaccaggaccaaatggtcccattggagaa
cccggaccccttggttcccctgggaaggagggtcctcctggccttcgtggagagaatggt
tcccctggaagacaaggagaaagaggccctccaggagcagctggaggcccaggagacaag
ggagactctggagaggatggacccacgggtcctgacggacccccaggtcccgccggaaca
actggacagagaggcattgtgggtcttcctggtcagaggggagaacgtgggatggttgga
cttccaggaccagcgggtcctccagggaaacaggggtctactggagctaccggagacaaa
ggccccccgggtccagtcggctctcctggtgctaacggacctcgtggcgatcctggtccc
gatggtcccgctggatctgatgggccgacagggaaagatggagtcattggtctaaggggc
gatcgaggggacccaggtccagaaggactgctcgggaccacaggacaacccggtacccca
ggtccagtcggtgcgaccggtggccctgggaaaagaggagacgctggatccagaggacca
aacggcccacctggatcggcgggaaagcgaggtttaacgggaccccaaggaccaagaggt
gacaagggagacctgggagaccatggggagagaggacagaagggacaccgaggcttcacc
ggtctacagggtcttcctggatcccccggtacaccaggagagcaaggagcggcaggaatc
gtcggaccgaatggccagagaggaccttccggacctgtcgggccgccaggaaaagaaggc
tacatcggccagcctggaccaatggggcagcctggaacacgtggattaagtggcgaaatt
ggacctgagggacccccaggagagcccggcccgactggcccccctggaccccctggcccc
cccacagctgccatggacgacctgtttgtcgacattcaggactacgactccggccctcct
cctcctcctgaattcagtgaggacgaggctctgcccaatagcaatgccacccagcccctt
gacccaggcgtgcaagccactctgaaggctctcagcagccagatcgacagcatgaaaagc
ccagatggcagcaggaagcacccagccaggacgtgccaggatctgaagcagtgctacccg
ctgaagaagactggggaatactgggtcgatccaaaccaaggaagctcagaggatgctatc
aaagtaaattgtaatatggagacgggagagacctgcatctcggccaatcccgccagcata
ccacgcaaagtatggtggagcacctcaaggaacaagcctgtgtggtttggagccgatatc
aacagaggaaaacaattcacctacggtaacaaagatcagcccgccaactctgtcaccgtc
cagatgacgttcatccgtctgctctccaaggaggcttcccaaaccgtcacctaccactgc
aagaacacagtgggctacaaggatgaggcgacgggcaacctgaaaaaagccgtcattctc
aagggctccaatgacctggagctcaaggcggaaggaaacagccggttccgatacacagtg
acagaggacagttgtgcaaaatccaatggcaagtggggcaagacggtgtttgagtaccgg
acacagaaaactgccagacttcccatcatggatatggcccctgtggacattggggggtca
gaccaggagtttggtatcgatatcgggccagtatgcttcctataa
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