Esox lucius (northern pike): 105019267
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Entry
105019267 CDS
T04894
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
els
Esox lucius (northern pike)
Pathway
els03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105019267 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
els03021
]
105019267 (smarcc1)
03036 Chromosome and associated proteins [BR:
els03036
]
105019267 (smarcc1)
Transcription machinery [BR:
els03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105019267 (smarcc1)
Chromosome and associated proteins [BR:
els03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105019267 (smarcc1)
PBAF complex
105019267 (smarcc1)
GBAF(ncBAF) complex
105019267 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
105019267
NCBI-ProteinID:
XP_010883618
UniProt:
A0A6Q2ZCZ0
LinkDB
All DBs
Position
LG20:30514211..30536712
Genome browser
AA seq
1098 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPVGLGTAVGRKKDGGPSSKYWESAETVSQLDTVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDSFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
SSYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVPDMDQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSPSQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVDGEVEDPPTSEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPR
EEESSRTSDRKERKANAAGKKRRRSPSPPTTPVESRKKGGKKGNPGPHWKRRGHRGEEEE
EEDLTKDMEDPSPVPGVEEVMLPKNINPKKDSENTPVKGGAVADLDELEDDSVVSGGKEE
EEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSKS
PEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAES
RPLPMGPPPTPHFNVLADTPSGLTPMHHRPPQIPPSQQMLNFPEKGKDKPSDLQNFGLRN
DLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL
PIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSR
VREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTEPAEAEKMDTD
SDSQHPDKGESKDEAEKPGESAEKPSEAEKVKSETTEQSEEGESDGGEDKDAAVCASFSD
KDKEEAMETSEEKEEDQGTTEEEKRRKLEPDGGEGNIATAAAAALASAATKAKHLAAVEE
RKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKY
AEMKARQQMEQQQANAAAQGPSPGPHHGPPGPNMHHGPPGPPHHGPPPAMHPGHGPTGPG
FPPMGHHSMGPHHSQQTGPVGGPGQPMPGRMMPGPLMGPRHPGAPNGMYAGPPPVQPDAM
PPAPVGPQAAVPARVADN
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggctcagggggcccagcagccggacca
gtgggccttggaaccgcggtaggccgcaagaaagatggaggtccgtcctcaaaatactgg
gagagcgcagaaactgtctctcagctcgatacggttcgccaatggatcgggaaacactac
aaaaagtatgtacaggcagactctccctccaataagtccctggcaggtctggtggtgcag
ctgcttcagttccaggaagattcttttggccggagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcaggtggcgctctgtgtcacatcctgggc
tcgtcctacaagtttaagagcgagcagggctggcgtaggtttgacttgcagaacccctcc
aggatggacagaaatgtggagatgttcttgaatgtagagaagactctggttcagaataac
tgcctgacccggccaactgtgttcctggtacctgacatggaccagaagcaggccaataag
ctgaaggacatcatcaagaggcaccagggctccatcactgaggacaagtccaaggccact
catcacatctatccctctccatcacagcaggaggatgaggagtggctgcgtcctgtcatg
cgtaaagacaagcaggtgctagtgcactggggcatgtatccagacagctatgacacctgg
gtgtccaccagcgacgttgatggggaggtggaggacccgcccacctcagagaagccttgg
aaggtgcatgccaagtgggtcctggacacagatgctttcaacgagtggatgaatgaggaa
gactatgaagtggacgagaacaagaagactgtgagcttccgccagaggatcttcccacgg
gaggaggagtcttcccgtacatccgatcgtaaggagcgcaaggccaatgccgccggcaag
aagaggaggcgctctccgtctcccccaaccacgccagtcgaatcccgcaaaaagggcggc
aagaaggggaaccccgggcctcactggaagcgtcgtggccaccgtggcgaggaggaggag
gaggaagacctgaccaaggacatggaagacccctcgcctgtccctggtgtggaggaagtc
atgctgcccaagaacataaaccctaagaaagacagcgagaacacccctgtgaagggaggg
gcggtggctgatcttgatgaactagaggacgactcggtggtctctgggggcaaggaggaa
gaggagcagggcaaggccgaggtcaaccgcctcattgactctagcgaggacaacgtgacg
gagcagacccaccacataatcatccccagctacgctgcctggtttgactacaattgtatc
catgagattgaaaggcgtgcattgcctgagttcttcaatggcaagaacaagtccaagtcc
ccagagatatacctggcttaccgcaacttcatgatcgacacctaccggctcaacccccag
gagtacctgacctccacctcctgccgccgaaacctgacgggagatgtgtgtgctgtcatg
agggtccatgcattcctggagcagtggggtctggtgaactaccaggtggatgctgaaagc
cggccgctccccatggggcccccacccaccccccactttaacgtgctggctgacacccca
tctggcctgacaccaatgcaccaccgccccccacagatcccccctagccagcagatgctt
aactttccagagaagggaaaggacaagccgtctgacctgcagaactttggcctgcgcaac
gacctctactccaagaagaaccccaaaagtaaagggaccagcggtggcagggagtggact
gagcaggagactctgctcctattagaggctttggagatgtacaaggacgactggaacaag
gtgtcagagcatgtgggctcacgcacccaggacgagtgtatcctgcacttcctccgcctg
cccatcgaggacccctacctggagaactctgagtcgtcccttgggcccctggcctaccag
cctgtccctttcagccaatcgggcaaccctgtcatgagcaccgtggccttcctggcctct
gttgtggacccccgtgtggcctccgctgcagccaaggcagctctggaggagtttagccgt
gtccgtgaggaggtaccagcagagctggtggaggcccatgtgaagaaggtgcaggaggcg
gcgcgcagcacaggcaaggtagaccctgcctttggcctggaaagcagcggcattgctgga
actgcccccgaggaacctgaaaagacagaaccagcagaagccgagaagatggacacagac
tccgactcccagcatcctgataagggtgagtcaaaggacgaggcagagaagcccggtgag
tcagccgagaagccatccgaggcagagaaagtgaagagtgagacgaccgaacagtcggag
gaaggcgagagtgacggaggagaggacaaggatgcagctgtctgtgcctcattttcagat
aaagacaaggaagaagccatggagacgtcggaggagaaggaggaggaccagggaaccaca
gaggaggagaagaggcggaagctggagccggatggaggggaagggaacattgccactgca
gctgctgcggccctcgcctctgccgccaccaaggccaagcatctggccgcggtggaggag
aggaagatcaagtctctggtggctctgttagtggagactcagatgaaaaagctggagatc
aagctccgacattttgaagagctggagaccatcatggaccgagagaaagaggctttggag
ttgcagaggcagcagctgctgacagagcgccaggccttccacatggagcagctgaagtat
gctgagatgaaggcccgccagcagatggagcagcagcaggccaacgcagcagcccagggc
cccagtcctggaccccaccacgggcccccagggcccaacatgcaccatgggccccctgga
ccaccccaccacggaccccctcccgccatgcaccctggacatggccccaccggacctggg
ttcccccccatggggcaccactctatgggcccccaccactcacaacagacaggaccagta
ggagggcctggtcagcccatgccagggcgcatgatgccaggccccctaatgggcccccgc
catcctggagctcccaacggcatgtatgctggccccccgcctgtccagcctgatgccatg
cccccggcgcccgtaggaccacaagcggctgtcccagcacgagttgctgataactaa
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