Esox lucius (northern pike): 105019789
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Entry
105019789 CDS
T04894
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
els
Esox lucius (northern pike)
Brite
KEGG Orthology (KO) [BR:
els00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
els04147
]
105019789
00535 Proteoglycans [BR:
els00535
]
105019789
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105019789
Exosome [BR:
els04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
105019789
Proteoglycans [BR:
els00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
105019789
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105019789
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
PDE8
Motif
Other DBs
NCBI-GeneID:
105019789
NCBI-ProteinID:
XP_019897744
LinkDB
All DBs
Position
LG22:complement(13452662..13501263)
Genome browser
AA seq
1436 aa
AA seq
DB search
MSNMKLWLGLPLLLAVSSGRLDAWFWSADPDPTTRAPATTPPPTEARTGGQPEAGEENLA
GVGADVADATPTAWTDGGVASPTMQTVPGVTLLQLIGDLPPDDSRSGPGGKPVYYFGGAD
GAQAAGQLALAHLPSPFYRDFSLVFHIMPTSPGVLFSITDASQKFMYVGVKLSPPDANGR
DQKVLFYYTEPESEASSLAATFTVPALDQVSWTRFSLSVSDDKVTLFMGCDTSGKTVKFE
RSPDDMELDRGAGIFVGQAGAADTDRFEGAIAELKVLGNPQAAELLCEDEDDSEGVSGSF
SGDGDRMETGQTVKTTAPSFRPMPEPPLSPSLSDRLSQTVAERNRLTLKESQLQGQQGPA
GSKGEKGDRGEKGSLGDRGPTGPKGDAGSSSSSGSSSGGGERGEKGDKGLKGSSGFGYPG
SKGDRGVPGPPGPPGPQGPAAQVVRLGDGSVVQQVAGPVGPRGPPGVQGPSGPPGPEGEA
GDPGEDGKEGPPGPRGFPGTPGITGLKGQKGHKGDGHPGPRGLPGPPGPPGPGSGDHPTF
WDMEGSGGFPDIEKMRTLQGPPGLPGKPGPPGPPGPPVMNVGSNATGSFGAPGLPGKDGS
PGLPGPPGPPGKPGPPGPSSVVKGKAGELGLPGPSGEKQDTSSAFSSFSSYFTRLFSSEG
DGSQGSQGENGLPGQEGQVGLAGLPGPIGPVGPPGPPGPPGPPYPVRYRDEDGTNVPEVL
GIPGPEGPPGNPGLPGKAGFPGIPGEKGSEGPRGRDGIPGMDGFPGKWGEKGERGDKGER
GLPGREGGPPGPPGPPGPPGQIYQTSDSYIGVYGGHEQRGPGFPGPPGLPGPMGPKGDNG
APGLPGYGAKGEKGEPVTILGPDGRPMFLGGLRGQPGERGLPGPEGPAGPAGPAGMKGDI
GMPGRPGRPGLNGVKGDSGGHGYPGAPGPPGPPGPPGQLVPRDRFSTPRYDDISQSYPQS
KGEKGDRGVPGIPGQPGLTTNFDIYAFKNEMKGEKGDFGTKGEKGEPAEGGYYGGGYSGL
GGQPGPPGPPGPKGDSIIGPPGPQGPPGNPGRGYEGRQGEPGPPGAPGPPGPSSLPGAYR
PSQTITIPGPPGPPGPPGANGLSSGVMMLRSYDTMTATARRQAEGTLVYLLDQADLYMRV
RDGFRQIQLGPYIALPPDQGNAVAAVDPPRVVYHQPEEHSPHPDPRQPQPEGQHPVYPDP
HYPTHPDPRYPTHPDPRYPSYTDRFPGPDPVRPVYPDTRYPVTPPHRPSPPLTHTHRHTV
GPSIHLIALNTPHGGNMRGIRGADLLCFNQARAIGLKGTFRAFLSSKLQDLHSIVRKSDR
GSVPIVNLKDEVLFDSWEAVFSEARVKDNISIYSFEGKDILTDSTWPDKMIWHGSTSRGQ
QQVDNYCEAWRVGERALTGMASSLQDGQLLQQSASSCQNSYAVLCIENSYFGQAKR
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacatgaagctgtggttaggccttcctcttctcctggcagtcagctctggtcgc
ctggatgcttggttctggagcgcggaccccgatcctaccacccgagccccggccactact
ccgccgcccactgaagcgcggacgggaggacagccagaggcgggtgaggagaacctggct
ggtgtcggggcagacgtggcggacgctaccccaacggcttggactgacggaggagtggcg
agccctaccatgcagacggtgcctggagtgactctactgcaactcatcggagacctacct
cctgacgactcccggagcggtccgggagggaaacctgtgtactacttcggaggggcggac
ggtgctcaggcggctggccagctggccctggcccacctgcccagccctttctacagagac
ttctccctggtcttccacatcatgcctaccagccccggggtcctcttttccatcacagac
gcctcccagaagttcatgtatgtgggggtgaagctgagcccccccgacgctaacggcaga
gatcagaaggtgttgttctattacacggagcccgaatcggaagcctcgtccctggccgct
acctttaccgtgcccgccctggaccaagtgtcctggaccaggttctctctgtcggtgtcg
gatgacaaggtgacattgtttatggggtgcgacacctcggggaagacggtgaagttcgag
cgctcgccggacgacatggaactggacaggggagcggggatctttgtgggtcaggcggga
gctgcggacactgacaggtttgagggagcgatcgctgaactgaaagtgctgggcaaccct
caagcagctgagctactctgtgaagatgaagatgactctgagggtgtatcaggatctttt
agtggggatggagacagaatggagacaggccaaactgtaaagaccaccgctccgtctttc
cgaccaatgccagagcccccactgagcccctcactgagcgacaggctgtcacagacagta
gctgaaaggaaccgtctaaccttaaaagagtcacaattacaaggtcaacaaggccctgct
ggttctaaaggggagaagggggaccgtggggaaaagggcagcttaggagacaggggcccc
accgggccaaagggggacgctgggtctagctccagctctggttcctcatcaggtggagga
gaacgtggagaaaagggagacaaaggcttgaagggcagttctgggttcggttacccaggc
tccaaaggggatcgtggtgtgcctggtccccccggtccacctggccctcagggccccgct
gctcaggtggtgagactaggggacggctctgtggtgcagcaggtggcaggcccagttgga
ccgaggggcccgcctggggtccaaggcccatcaggtcccccggggccagagggagaggcg
ggggatccaggagaggatggcaaagaaggaccccctggacccagaggtttcccaggaaca
ccaggaatcacaggactcaaaggacagaaggggcacaaaggcgatggtcatcctggaccc
aggggactcccagggccacctggacccccagggccagggtcaggtgaccacccgaccttt
tgggatatggaaggctcaggagggttcccagatatcgagaaaatgcggactcttcaaggt
ccacctggcctccctgggaaaccaggtccccctggccccccaggccccccagtcatgaat
gttgggagcaatgcaacaggctccttcggggcccctggacttcccggaaaggatgggagc
ccgggcctaccaggcccccccggtccacctggcaaacccggacctccaggacccagcagc
gtagtgaagggaaaagctggagaactaggtcttccaggtcccagtggagagaagcaagac
acttcgtctgccttctcgtccttctccagctatttcacccgcttgtttagttcagagggt
gatgggtcacagggttcccaaggagaaaacggattgcctggtcaggaagggcaggtgggc
ttggccgggctccctgggcctattggacctgtcgggcccccaggacccccgggaccccct
ggacctccataccctgtccgttatcgtgacgaggatggtaccaatgttcctgaggtttta
ggcattccaggaccagagggaccacctggaaaccctggccttccagggaaggccggattc
cctggcattccaggagagaagggtagcgaggggccgagaggacgggacggaataccagga
atggatggattcccaggaaaatggggagaaaaaggagagagaggagacaagggggagagg
ggtcttccaggacgtgaagggggaccccctggacctccaggaccccctggcccaccagga
cagatatatcagacctcagacagctatattggagtttatgggggtcacgagcagagagga
ccaggttttcccggcccaccaggactcccagggcctatggggccaaagggagacaatgga
gcgcccggactgcccggctatggagctaagggggagaaaggagaacctgttactattctg
ggacctgatggcagaccaatgttcctgggaggcctgcggggtcagccgggagagcgagga
ctgcctggacctgagggccctgctggtccggctggtcctgctggcatgaaaggagatatt
ggcatgccaggtagaccgggtcgtcctgggttgaatggtgtcaaaggagacagtggagga
catggatacccaggtgctcccggaccacctggcccacctggacccccagggcagttagta
cctcgggacaggttcagtactccgaggtatgacgatatctcgcagtcatatcctcaatcc
aaaggagagaaaggtgatcgtggagtaccaggaatacctggccaaccaggtctcaccaca
aactttgacatctacgcctttaagaatgaaatgaagggagagaaaggagactttgggacg
aagggagagaagggcgagccagcagaagggggttattatggaggaggctacagtggactg
gggggtcaacctggccctccaggacctccagggccaaaaggagactccatcattggtcct
ccggggccccagggtccgccaggtaacccaggaagaggatatgaaggcagacagggggag
ccaggtccgccgggggctccgggtcctccaggaccgtcctccttacctggggcttacagg
ccatcacagaccatcaccatcccgggacctccaggccctccgggtcctcctggggccaat
ggactctcctccggggtgatgatgctgaggtcctacgatacgatgacagccactgccagg
cgacaggctgaggggactctggtatatctgctggaccaagcagacctctacatgcgagta
cgagacggattccggcaaatccagcttggaccatacatagctttaccacctgaccagggt
aacgcggtggcagcggttgaccctccccgggtggtctaccatcagccggaggaacactcc
ccccacccagacccccgtcagccccagcccgagggacagcaccccgtgtaccccgacccg
cattacccgacacaccccgacccgcggtacccaacacaccccgacccgcggtaccccagt
tatacggaccgcttccccgggcctgaccccgttaggccagtttacccggacacccgttac
cctgtcaccccaccacacagaccaagcccccctctgacccacacccaccgacacacggtg
ggacccagcattcacctgatcgccctgaacacccctcacgggggtaacatgcggggtatc
aggggggcagacctcctgtgcttcaaccaggctcgggccatagggctgaagggaaccttc
agggctttcctgtcctccaagctccaggaccttcacagcatcgtccgcaagtcagacagg
ggcagcgtgcccattgtcaacttgaaggatgaggtcctgtttgacagttgggaggccgtc
ttcagtgaagccagagtgaaggacaacatctcaatctactccttcgaaggaaaagacatc
ctcacagacagtacatggccagataaaatgatatggcacggttccaccagcagggggcag
caacaggtggacaactactgtgaggcgtggcgagtaggagagcgtgctttaacaggcatg
gcctcctctcttcaagatggccagctcctccaacagagcgccagcagctgccagaactcc
tacgccgtactctgcatcgagaacagctacttcggacaggccaagagatag
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