Esox lucius (northern pike): 105020176
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Entry
105020176 CDS
T04894
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X3
KO
K14327
regulator of nonsense transcripts 2
Organism
els
Esox lucius (northern pike)
Pathway
els03013
Nucleocytoplasmic transport
els03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105020176 (upf2)
03015 mRNA surveillance pathway
105020176 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105020176 (upf2)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105020176 (upf2)
mRNA cycle factors
P-body specific factors
105020176 (upf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
105020176
NCBI-ProteinID:
XP_010885248
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All DBs
Position
LG23:complement(17838468..17859017)
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AA seq
1346 aa
AA seq
DB search
MPAERKRSVNMDEKEVSSFSNKDKEKERDGERRPASSRDKGKDEVKLSGKKDSGKAVEEK
RRRQEEEKRKKEEKERKRKEEEKQKAEEEQRKKEEEDKIQQEEQERKLQEEEAKRQREEE
AAQLKEKEEGHQLHQEAWERHQSRKELRARNQNAHECRPEETFFSRLDSSLKKNTAFVKK
LRTLTEQQRDTLSNDFSSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFA
PLLLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGT
DRETHTHVSVVISFCKHCGDDIAGLVPRRVKAAREKFGLTFPPSEIINTEKQQPFQNLLR
EYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLA
DLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAF
VPAILFKDNEKGKEKEEAAAKEAKDAAATTEELELELEALDITDDPLEMDGPDEAENEAE
LAKKLLDEQGKDEEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTK
SNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSILKGDFRFHIRKKDQI
NIETKNKTVRFMGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSP
DSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKL
LYKDLSKVTTEKVLRQMRKLPWQDPECKGYLICCMVNIWNVKYNSIHCVANLLAGLVAYQ
EDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFIS
FGVNSDGSPSPLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKS
VEVWSKEHPFPIDIDYMISDTLELLRPKMRLCTSLEESTRQVNELEREFLVKLGLANDGQ
KDGRPSSALGSEGETVDEDDDDDDEEGGADTEEQSGNESEMNEPEEEKQAHNHTLHLRTC
CVFQEGSENEEEDREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFI
QALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLKKGPGGPVCPGEGEADISDTMQFV
MLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMM
ASLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRKQEIKNERHLRQEKHERQAKQE
RHDKQERNGRYEGQEPRVSQLSRTRY
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagcgcaagagatcagtaaacatggatgagaaagaggtgagctccttcagt
aacaaggacaaggagaaagagcgggatggtgagaggaggccggcctcctcccgggataaa
gggaaggatgaagtcaagttgagtggaaagaaagacagtggtaaggctgtagaggagaag
aggaggagacaggaagaagagaagagaaagaaggaagaaaaggagcgaaaacgcaaagag
gaggagaaacagaaggcagaggaggagcaaaggaagaaagaggaagaggacaagatacag
caggaggagcaggaaaggaaacttcaggaagaggaggccaagagacagcgtgaagaggag
gcagctcaactcaaggagaaggaggaaggccatcagctgcaccaagaggcctgggagcgc
caccagagccgcaaggagctgcgtgcacgcaaccaaaacgcccacgaatgccgtcccgag
gagaccttctttagccgcctagactccagcctgaagaaaaacacagcattcgtcaagaag
ctgcgcacactgactgaacagcagcgtgacaccctttccaacgacttcagctcactcaac
ctcagcaaatacattggcgaggcggtgggctcggtggtggaggccaaactgaagatctct
gatgtgggttgcgccgtgcacctgtgttccctcttccaccagcggtatgctgaatttgct
cctctgcttcttcaggcctggaagaggcactttgaggcgcgcaaggaggaaaaggcgccc
aatgtgagcaagttgcgcactgacttgcgcttcatcgcagaactcaccattgtgggcctg
ttcacagacaaggagggcctctcactcatctacgagcagctgaagagcataattgggacg
gaccgcgagacacatacacacgtatcagtggtcatcagcttctgcaagcactgcggggac
gacattgctggactggtgcctcgcagggtgaaggctgcacgggagaagtttggcctgacc
ttccctcccagtgagatcatcaacacagagaagcagcagcccttccagaacctgctgagg
gagtacttcacctcactaactaaacacctgaaaaaggaccaccgcgaactgcagaacatt
gagaggcagaacaggcgcatcctccactccaaaggggaactgagcgaggaccgacacaaa
caatacgaggagtttgccacgtcctaccagaagctactggctaacactcagtctctggct
gacctgctggatgagaacatgccagagcttccacaggacaagactgtgcaagaagagcat
ggtcctggaatcgacatcttcacccctggaaagcctggggagtatgacctggaggggggc
atctgggaggacgaggatgctaggaacttctacgagaacatggtcgacctgaaggcattt
gttcctgccattctgttcaaagataatgagaagggcaaggaaaaagaggaggctgctgct
aaagaggccaaagatgctgccgccaccacggaggagttggagctggagctggaagctctg
gacatcactgacgaccccctggagatggacgggccggacgaggcagagaatgaggcagag
ctcgccaagaaactgttggacgagcaaggtaaagacgaagaacaagaggatgaggaggcc
agcacagggtcccacctgaagctcattgtggacgctttcatccaacagctccccaactgt
gtcaacagggacctcatagacaaggctgccatggatttctgcatgaacatgaacacaaag
tctaaccggaggaagctggtccgggctctcttcactgtccccaggcaaaggttggatctg
ctgcccttctactctcgtctagtggctaccctccacccctgcatgtcagatgtggccgag
gacctgtgctccattcttaaaggagacttcaggttccacatccggaaaaaggatcagatc
aacatcgaaacgaaaaataaaactgtcaggtttatgggcgagttggccaagttcaagatg
ttctccaaaacggatactctgcattgtcttaagatgctactgtcagacttttcccaccac
cacatcgagatggcatgcaccttgctagagacatgtggacggttcctcttcagatccccg
gactcccacctgaggacaagcgtacttctggagcaaatgatgcgtaagaagcaggcccag
cacctggacgctcgctacgtcaccatggtggagaacgcctactactactgcaaccccccg
cccatggagaagacggtcaggaagaagaggcccccgctgcaggagtacatccgcaagctc
ctctacaaggacctctccaaggtcaccacggagaaggtgttgaggcagatgcgtaaactc
ccctggcaggacccggagtgtaaaggctaccttatctgctgcatggtcaacatctggaac
gtcaagtacaacagcatccactgtgtggccaacctgctggccggtctggtggcctaccag
gaggacgtgggcatccacgtggtggacggcgtgctggaggacatccgactgggcatggag
gtgaatcagcccaaattcaaccagcgtcggatcagcagtgccaagttcctgggggagctc
tacaactaccgcatggtggagtcagcggtcatcttccgcaccctgttctccttcatctcg
ttcggggtgaactcggacggcagccccagccccctggacccccccgaacacctgttccgc
atccgcatggtctgcaccctgctagatacctgcggacagtactttgaccgcggctccagc
aagaggaagctggactgcttcctcatctacttccagaggtacatctggtggaagaagagt
gtggaggtgtggagcaaggagcacccgttccccattgacatcgactatatgatcagtgac
accctggaactgctcaggcccaagatgaggctctgcacatcactggaagaatccaccagg
caggtcaacgagctggagagggaatttctggtcaaactgggtctggccaatgatggacag
aaggacggccggccctccagcgcattggggagtgaaggggagactgtagatgaggatgat
gacgatgatgacgaagagggaggggcggacacagaggagcagtcgggcaacgagagcgag
atgaacgagccagaggaagaaaaacaagcacacaatcacacactccatctaagaacctgc
tgtgtgttccaggaagggtctgagaatgaggaagaggatcgggaggaagaggaggaggag
aacactgactatctgaccgactccaacaaggagaatgagaccgatgaggagaacaatgag
gtgaccattcgtggtggcggcctgaagcacgtggcgtgcgctgaggatgaggactttatc
caggctctggataagatgatgctggagaacctgcagcagcggagcggagaagcagtgaag
gtgcaccagttggacgtggccatccccctgcagctgaagagccagctgaagaaaggcccg
gggggacccgtctgcccaggagagggagaggcggatatctctgataccatgcagtttgtc
atgctcacacgcaagggcaacaagcagcagtttaagatcctgaatgtgcctctgtcgtcc
catctggccgccaaccacttcaaccagcagcaggcagagcaggaggagaggatgaggatg
aagaagctcactctggacatcaacgagagacaggagcaagaggactaccaagaaatgatg
gcgtctctggcccagcgtcccgcaccagccaacaccaaccgggagcggcgcccgcgctac
caacaccccaaaggggcacctaacgccgacctcatcttcaagactggaggaagaaagcag
gaaataaaaaatgagagacatttaaggcaggaaaagcatgagcgacaagccaaacaagag
aggcatgacaaacaggagcgaaatggcagatatgagggccaggagcctagggtcagccag
ctcagccggacacgctactga
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