Esox lucius (northern pike): 105020683
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Entry
105020683 CDS
T04894
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
els
Esox lucius (northern pike)
Pathway
els03020
RNA polymerase
els03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105020683 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
105020683 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
els03021
]
105020683 (polr2a)
03400 DNA repair and recombination proteins [BR:
els03400
]
105020683 (polr2a)
Enzymes [BR:
els01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105020683 (polr2a)
Transcription machinery [BR:
els03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105020683 (polr2a)
DNA repair and recombination proteins [BR:
els03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105020683 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
105020683
NCBI-ProteinID:
XP_028973270
LinkDB
All DBs
Position
LG24:9679763..9695287
Genome browser
AA seq
1971 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFINKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCRGKNICEGGEEMDNKFGVDQQEHDSEDITKEKGH
GGCGRYQPSIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDIILGLDPK
FARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWST
FRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
AIRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMG
HDVTRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNMATLKPSNKAFEKKFRFDCTNERALRRTLQEEVVKDVMTNARVQSALEREFEKMKE
DREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLV
IVNGEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTV
FLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPD
FDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEEGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LNHVISFDGSYVNYRHLSLLCDTMTSRGHLMAITRHGINRQDTGPLMKCSFEETVDVLME
ASAHGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGGPTG
MFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPASPYIPSPGGGMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPSSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPT
SPSYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPMSPSYSNPSPTYTLNSPAISPDDSDEENN
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggtcactgaagggggaattaag
taccccgagaccacagaaggaggacgtcccaaactcggtgggctgatggaccccagacaa
ggggtcatcgaacgatcgggaagatgtcagacgtgtgcaggtaacatgacagaatgcccg
ggccacttcggacacatagagctggcaaagccggtgttccacgtaggcttcatcaacaag
atcatgaaggttctccgatgtgtatgctactcctgctccaagctgctggtggacactaat
aacccaaagatcaaagacattctgcagaagtccaaggggcagcccaggaaacgcctgacc
catgtgtatgacctatgtagaggcaagaacatctgcgagggtggggaggagatggacaac
aagtttggagtggatcagcaggagcatgacagtgaagacatcaccaaggagaagggtcac
ggtggctgcgggcggtaccagccgagtatccgccggtcaggcctggagctgtacgccgag
tggaagcatgtaaacgaggactcgcaggagaagaagatcctgttgagccccgagcgcgtc
tacgagatcttcaagcgcatctcggacgaggaggacatcatacttggcctggaccccaag
tttgcccggccggagtggatgattgtgacggtacttcctgtgccgccgctggctgtcaga
cccgcggtcgtcatgcagggctcagcccgtaaccaggacgacttgacgcacaagctggct
gacatcgtcaagatcaacaatcagctgcggcgtaacgagcagagcggcgccgcggcccat
gtcattgctgaagatgtgaagctgctgcagtttcacgtggccaccatggtggacaacgaa
ctgccgggtctacccagggcaatgcaaaaatcggggcggccgctcaaatccctcaaacag
cgtctaaagggaaaggaagggcgagtccgaggtaacctgatgggaaaacgtgtggatttt
tctgcccgaaccgtcatcacccctgaccccaatctccaaatcgaccaagtgggcgtgccg
cgttccattgccgccaacatgactttcccagagatcgtcacgccctttaacattgacagg
ttacaagagctggttcgcagaggcaacagccagtacccgggagccaaatatatcatccgt
gacaacggggacaggattgacctgcggtttcacccgaaaccaagcgaccttcacctccag
attggctataaggtggaaagacacatgtgcgacggtgacatcatcatcttcaaccgacag
cctacgctacacaaaatgtccatgatggggcacagggtccggattctgccctggtccacc
ttccggatgaacctcagtgtcaccacaccctacaatgccgacttcgatggggatgagatg
aacctgcatctgccccagtcccttgagacgagagctgagatccaggagctggccatggtg
cctcgcatgatcgtcaccccccagtccaaccggcctgtcatgggcatcgtgcaggacacc
ctcaccgccgtgcgcaagttcaccaagagggacgtcttcctagagcggggtgacgtgatg
aacctgctgatgttcctgtctacgtgggatggcaaggtgcctcagccggccatcctgaag
ccccggccgctgtggacgggcaagcagatcttcagcctcatcatcccgggccacatcaac
gccatccgaacgcacagcacccacccagatgaggaggacagtgggccctacaagcacatc
tcccccggggacacaaaggtgatagtagagaacggggagctgatcatgggcatcctgtgt
aagaagtcgctgggtacctcggccggctccctggtccacatctgcttcctggagatgggc
cacgacgtcacccgactcttctactccaacatccagacggtggtcaacaattggctgctc
attgagggtgcttctatcggtattggtgactccattgctgatgcaaagacatacttggac
atccagaacaccatcaaaaaggccaaacaggatgtgatagaggtcatcgagaaggctcac
aacaatgagctggagcccacccccggtaacacgctgaggcagacctttgagaaccaggtc
aatcgcatcctgaacgatgcccgtgacaaaacgggctcctccgcccagaagtccctgtct
gagtacaacaacttcaagtccatggtggtggccggctccaagggttccaagattaacatc
tctcaggtcattgccgtggtgggtcagcagaacgtggagggtaagcgcattcccttcggc
ttcaagcaccgcacgctgccccacttcatcaaggatgattacggccctgagagcagaggc
tttgttgagaactcttacctggccggcctcacgcccactgagtttttcttccacgccatg
ggaggcagagaggggcttatcgacacagctgtgaagaccgccgagactggatacatccag
cggcgcctgatcaagtccatggagtccgtgatggtgaagtacgacgccacggtgaggaac
tccatcaaccaggtggtgcagctgcgctatggggaggacggcctggccggggagagcgtg
gagttccagaacatggccacgctgaaaccgtccaacaaggccttcgagaagaagttcaga
ttcgactgcaccaacgagcgggccctgcggcgcaccctgcaggaggaggtggtgaaggac
gtgatgacaaacgcccgcgtgcagagcgccctggagagggagtttgagaagatgaaggag
gacagagagatcctgagggccatcttccccaccggtgacagcaaggtggtgctgccctgc
aatcttgccagaatgatctggaacgcccagaagatcttcagaatcaaccctcgcaccccc
acggacctcaaccccctccgagtggtagagggtgtccaggagctgagtaaaaagctggtg
attgtgaacggggaggatcatctgagcaggcaggcccagcagaacgccacgctgctcttc
aacatccacctgcgctccacgctcagctccaggcgcatgaccgacgagttccgactcagc
acggaggcctacgactggctgctgggagagatcgagtccaagttcaaccaggcaattgcc
cacccgggtgagatggtgggggcgttggccgctcagtcgctgggtgagcccgccacccag
atgaccctgaacaccttccactacgccggtgtgtcggccaagaacgtcaccctgggtgta
ccccgtcttaaggagctcatcaacatctctaagaggcccaagaccccctctctcaccgtc
ttcctgctgggccaggcggcccgcgacgcagagagggccaaggacatcctctgtcggctg
gagcacaccaccctcagaaaggtgaccgccaacacagccatctactacgaccccaacccc
cagagcaccgtggtgacggaggaccaggagtgggtcaacgtctactacgagatgcccgac
ttcgacgtgacccgcatctccccctggctgctccgcatcgagctcgaccgcaagcacatg
actgaccgcaagctgaccatggagcagatcgcggagaagataaacgcagggttcggcgac
gacctcaactgtatcttcaacgacgacaacgcggagaagctggtcctgcggatccgcatc
atgaacagcgacgagaacaagttccacgaggacgaggaggtggtggacaagatggacgac
gacgtcttcctgaggtgcatcgagtccaacatgctgacggacatgacgctgcagggcatc
gagcagatcagcaaggtgtacatgcacctgccgcagaccgacaacaagaagaagatcatc
atcaccgaggagggcgagttcaaggccctgcaggagtggatcctggagacagacggcgtg
ggcctcatgagggtcctgagcgagaaggacgtggaccccgtcaggaccacctccaacgac
atcgtggagatcttcacggtgctggggatcgaggctgtgcggaaggccctggagagggag
ctgaaccacgtcatctccttcgacggctcctacgtcaactaccggcacctgtccctgctc
tgtgacaccatgacgtcccgcggccacctcatggccatcacgcgtcacggcatcaaccgg
caggacacggggccgctcatgaagtgctcctttgaggagacggtggacgtgctgatggag
gcctcggcccacggggagagcgacccaatgaagggcgtgtctgagaacatcatgcttggc
cagctggccccctgcggaacgggctgcttcgacctgctgctggacgcagagaagtgcaaa
tacggcatggagatcccgactaacatccccggcatcagtgtggctggaggacccaccgga
atgttctttggctcggcgccgagccccatgagtggcatgtctcccgccatgaccccctgg
aacaccggcgccaccccggcctacggggcctggtccccaagcatcggtagcgggatgacc
cccggggcagccggcttctcccccagtgcggcgtccgacgccagcggcttctctccgggc
tattccccagcctggtcgcctacccctgggtctcctgggtccccggggccagccagcccg
tacatcccgtccccaggaggtgggatgtctcccaactactcccctacctccccagcctat
gagccccgctctcctgggggatacaccccgcaaagcccaggttactccccaacctccccc
tcctactccccaacctccccctcttactcccctaccagcccaaactacagccccacctca
ccctcttattcacccacctcccccagctactcccccacctccccctcatactcccctaca
tctcccagttactctcccacttccccctcatactctccaacctccccttcctactctcca
acctccccttcttattccccgacctctcccagctacagcccaacgtccccaagctacagc
ccaacatcgccgagctactcccccacctccccctcttactcccccacctccccctcctat
tcgcccacgtctccctcctactcgcccacctcaccctcttactccccaacctccccttct
tactctccaacgtccccaagctacagcccctcttcgcctaactacacccccacctccccg
agttactccccgacctccccttcctactcgcccacctccccttcctactcgcccacctcc
ccgaactacacccccaccagccccaactactcccccacctccccctcctactctcccacc
tctccatcctattctccctccagcccacgcttcactcctcagtcgcccacctacaccccc
agctctccctcctacagcccaagctcgccgtcctactcccccacctctccaaaatacacc
cctacgtccccgtcttactcccccagctcgcccgagtacacccccacctcgcccaaatac
tcccccacctcgcccaagtactcccccacctcgcccaagtactcccccacctcgcccacc
tactctccgacgacccccaagtacagccccacctcgcccacctactcccccacctcgccc
acctacacccccaccagccccaaatactcccccacctcgcccacctactccccgacgtct
ccaaagtactcgcccacctcccccacctactcgcccactagccccaaaggatccacctac
agcccaatgtctccgagctacagcaacccctcgcccacctacaccctcaacagcccggcc
atcagcccagacgacagtgatgaagagaacaactga
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integrated database retrieval system
