Esox lucius (northern pike): 105022110
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Entry
105022110 CDS
T04894
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
els
Esox lucius (northern pike)
Pathway
els03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105022110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
els03041
]
105022110
03009 Ribosome biogenesis [BR:
els03009
]
105022110
Enzymes [BR:
els01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105022110
Spliceosome [BR:
els03041
]
Complex A
U2 snRNP components
U2 related factors
105022110
Complex B
105022110
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105022110
Ribosome biogenesis [BR:
els03009
]
Eukaryotic type
90S particles
Helicases
105022110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
AAA_29
DUF3915
Motif
Other DBs
NCBI-GeneID:
105022110
NCBI-ProteinID:
XP_010888561
UniProt:
A0A3P8YL02
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Position
LG24:10828450..10862818
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AA seq
758 aa
AA seq
DB search
MSKRHRVDLGEDYSSSKKKTSSDGRDRDRDRDERSKDRDRDRDRDREHKPSGVALNPTVC
GLSPGLLPLKQTAVQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILARHQSFV
LVGETGSGKTTQIPQWCVDMVRGLGGPKKAVACTQPRRVAAMSVAQRVADEMDIMLGQEV
GYSIRFEDCSSAKTLLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLK
EVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIR
TVIQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKIIPLYSTLPPQQQ
QRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLL
VTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKL
GIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIA
SCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFKQN
HESTQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALVTGF
FMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVMYNEFVLTTKNYIRTCTDIKPEW
LVKIAPQYYEMGNFPNCEAKRQLERIVAKLSTKEYSQY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacgacatagggtggatttgggagaggattattcgtcgagtaaaaagaaaacc
tcttctgatgggcgagaccgagatcgcgaccgagatgagcggtcaaaggaccgagacagg
gaccgggaccgggaccgcgagcacaagccctccggagtggccctgaacccgacagtctgc
ggactcagcccaggcctcctccctctcaagcagacagccgtacagcagcagatcaacccg
ttcaccaaccttccccacacgcctcgctactacgagatcctgaagaagaggctgcagctg
cccgtgtgggagtacaaggaacgcttcaacgacatcctggcacgccaccagagctttgtg
ctcgtcggagagacgggctccggcaagaccacgcagatccctcagtggtgcgtggacatg
gtgaggggtttgggcggccccaagaaggcggtggcctgtacccagcccaggagggtggcg
gccatgagtgtggcccagcgggtggcagacgagatggatatcatgctgggccaggaggtg
ggctactccatccgatttgaggactgcagctctgccaaaaccctcctcaagtacatgaca
gacggcatgttgctgcgcgaggccatgaacgaccctttactggagcgctacggtgtcatc
atcctggacgaggcccacgagagaacgctggccacagacatcctcatgggcgtcctcaaa
gaagtggtccggcagaggtccgacctcaaggtcattgtcatgagcgctacgctcgatgct
ggcaagttccaggtgtactttgacagctgtccactactgaccatcccaggacgtacacat
cccgtggagatcttctacacaccagagcctgagagggactacctggaagcggccatccgc
accgtcatccagatacacatgtgtgaggaggaggagggagactgtcttctcttcctcact
ggacaagaggaaatcgacgaggcctgcaagcgcatcaagcgggaaatcgacgacctgggg
cccgaggtgggagacatcaaaatcatcccgctgtactcgacgctgccgccccagcagcag
cagaggatcttcgagccgccgccgccacgcaagcccaacggagccatcggcaggaaggtc
gtggtgtcgacaaatatcgctgagacgtccctgaccattgacggcgtggtgttcgtaatt
gatcctggatttgccaagcaaaaggtgtacaacccccgtatccgagtggagtccctgctg
gtgacggccattagcaaagcctcggcccagcagagggcgggacgcgctgggaggacacgg
cccgggaagtgcttccgcctgtacacggagaaggcctacaagaccgagatgcaggacaac
acctatcctgagatcttacggtctaacctgggctcggttgtactgcagttaaaaaagctg
ggaattgacgacttggtacatttcgacttcatggacccaccagccccggagaccctgatg
cgggccctggagctactgaattacctggcggcgctgaacgatgacggagacctgacggag
ctgggctccatgatggccgagttccccctggacccccagctggccaagatggtgatcgcc
tcctgcgagttcaactgctccaacgagatcctgtccatcacggccatgctgtcagtccca
cagtgtttcgttcgaccaacggaggctaagaaggcagccgacgagtccaagatgaggttc
gcccacatcgacggagaccacctgacgctcctcaacgtctaccacgccttcaaacagaac
cacgagtccacgcagtggtgctatgacaactttgtgaactaccggtcgctgatgtcggcc
gacaacgtgcgccagcagctctcccggatcatggaccgcttcaacctgccgcgccgcagc
accgagttcaccagcagagactactacatcaacatccgcagggcactggtcacgggattc
ttcatgcaggtggcccacctggagcgtacaggccactacctgaccgtgaaggacaaccag
gtggtccaactgcacccctccaccgttctggaccacaagccggagtgggtgatgtacaat
gagtttgtgctgaccaccaagaactatatccgcacctgcaccgacatcaaacccgagtgg
ctggtgaaaatcgccccgcagtactacgagatgggcaacttccccaactgtgaagccaag
aggcagttggagcgcatcgtcgctaaactgtccaccaaggaatactcccaatactga
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