Esox lucius (northern pike): 105022420
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Entry
105022420 CDS
T04894
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
els
Esox lucius (northern pike)
Pathway
els03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105022420 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
els03041
]
105022420 (prpf40a)
Spliceosome [BR:
els03041
]
Complex A
U1 snRNP components
U1 related factors
105022420 (prpf40a)
Complex B
105022420 (prpf40a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
Motif
Other DBs
NCBI-GeneID:
105022420
NCBI-ProteinID:
XP_010889088
UniProt:
A0A3P8YIB4
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Position
LG16:complement(15347166..15367517)
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AA seq
892 aa
AA seq
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MSSDGNNGQSQAPSFAGVQPSGMQLPYMGPPGMPPHYPPMGMPPMGQRPPNMAPMPPGMM
PPGMMPPMGGPPMGQMPGMMPPMMPGMMMPPRMPAAAMQPTGPPGVDTTVPAVPGTVGTT
NGSPQDDQPKKKSVWTEHKSLDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYK
SDNGKAYYYNSQTKESRWTKPKELEDLEAMIKAEENGTPEMAAPAAVMPPPIQLDSTAAM
ATMMMEMPAIVPATAVAVEQMSQVPMHVAEVRADTPVTSAEEAVVMEAPASKDVSKEERP
ELVKKTYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAF
NAYKVQTEKEEKEEARIKYKESKETYQRFLENHEKMTSTTRYKKAEQMFSDLDVWSTVPE
RDRIEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNP
TFAEDEELQNMDKEDALICFEEHIRALEKEEDDEKQKTLLRERRRQRKNREAFQKFLDEL
HDHGQLHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHD
EKRIIKDILKDKNFLVEVNTSFEDFGTVISSDKRATTLDAGNIKLAFNSLLEKAEARERE
REKEEARKMKRKEAAFKSMLKQATPALEPEASWESVRERFLKESAFEDVTLESERKRIFK
DFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEGEDDYNSKKKKRSQSKSPS
ERSSSGESERSYKKSKKHKKKGKKRRHKSQSPESEGERKDKGRERDSKREKDQEKDKEND
KSRAKGRSESKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggcaataatggtcagagccaagcaccttctttcgctggggtccagccc
tcagggatgcagttgccttatatgggaccgccgggaatgccacctcattacccacccatg
ggaatgcctcccatgggacagaggcctcccaacatggctcccatgccacctggcatgatg
ccgcctggcatgatgccaccgatgggcgggccaccgatgggacagatgccaggcatgatg
ccacctatgatgcccgggatgatgatgccacctcgaatgccagctgcggcgatgcagccg
acaggaccgcctggcgttgacaccactgtccctgctgtacctggaaccgttggtaccaca
aatggctcgccacaagatgaccaaccaaagaagaagtctgtgtggacagaacacaagtct
ctggatgggaagacgtactactacaacacagagactaagcagtcttcttgggagaagcca
gatgacctgaaatctcctgcagaacaaatgctgtctaaatgcccatggaaggagtataaa
tcagacaatggcaaggcgtactactacaactctcagactaaagagtcccgatggaccaaa
cccaaagagcttgaagatctggaagccatgataaaagcagaggagaacggtaccccggag
atggccgcccccgccgctgtcatgcccccccccattcagctcgacagcactgctgccatg
gcgaccatgatgatggaaatgccggccattgtgccagctacagcagtggctgtggagcag
atgtcccaggtgcctatgcatgtggccgaggtcagagctgacacacctgtcacctccgca
gaggaagccgtcgtcatggaggccccagccagtaaggatgtctcaaaggaagagaggcca
gagctggtgaagaagacatacaagtggaacactaaagaagaggccaaacaagcctttaaa
gagcttctgaaggagaagggtgtttcatccaacgcgtcttgggaacaagccatgaaaatg
atcatcaacgacccacgatacagcgccctgcccaaactaagcgagaagaagcaggccttc
aacgcttacaaagtgcagacggagaaggaggagaaggaggaggctaggataaagtacaag
gagtccaaggaaacctaccagagatttctggagaaccacgagaaaatgacgtctacaacg
agatacaagaaagctgagcagatgttttcagacctggatgtgtggagcaccgttccagaa
cgagacagaatagagatctatgaagacgtccttttctacctagccaagaaggagaaggag
caggccaagcagctgaggaagaggaactgggaggctctgaagaacatcctggacaacatg
gccaatgtgacataccgaaccacctggtccgaggctcagcagtacttgctggacaacccc
accttcgctgaggacgaggagctccagaacatggacaaagaggatgctctgatctgtttc
gaggagcacatccgtgcgctggagaaggaggaggacgacgaaaaacaaaagaccctgctg
agggagaggaggagacagcgcaagaaccgagaggccttccagaaattcctggacgagctc
catgaccacggccagctccactccatgtccgcctggatggagatgtaccccacagtcagc
tcagacatccgctttgccaacatgctcggccagcctgtttatggtgtttattctgcaggc
tccacgccgctcgacctgttcaagttctacgtggaggacctgaaggctcgctaccacgat
gagaagaggatcatcaaagatattctgaaggataaaaacttcttggtggaagtcaacact
agctttgaagactttggcacagtgatcagctcggacaagagagctaccacgctggacgca
ggcaacatcaagctggccttcaacagcctgctggagaaagccgaggctcgggagagggag
cgggagaaggaggaggcccggaagatgaagaggaaagaggcagccttcaagagcatgttg
aagcaggccactccagccctggaaccagaggccagctgggagagtgtccgtgaaaggttc
ctcaaagaatctgcctttgaagacgtcactttggagtccgagaggaaaagaatattcaaa
gatttcatgcatgtgttggagcacgagtgccagcatcatcattcgaagaccaagaaacac
tccaagaagtctaagaagcatcacaggaagcgctcccgctctcgatcggggtcggagtca
gaaggcgaggacgattacaacagtaagaagaagaagcgctcacagtccaagtccccatcg
gagcgctcctccagtggcgaatcagagagaagttacaagaagtccaagaagcacaagaag
aagggcaagaagaggcgtcacaagtcgcaatctcctgaatcagagggggagcggaaagac
aaaggaagggagagggacagcaagcgtgagaaggaccaggagaaagacaaagagaacgac
aagtcccgggccaagggccgctccgaatcgaagcagaagtcgcctaaaaggaaatcgacc
aaggaagagggaggctgggacacatcaggcagtgagctgagtgaaggagagctggagaag
aggaggaggactctcctggagcagctggatgctccttga
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