Esox lucius (northern pike): 105022600
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Entry
105022600 CDS
T04894
Symbol
col11a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
els
Esox lucius (northern pike)
Pathway
els04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
els00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105022600 (col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105022600 (col11a1)
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105022600 (col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
105022600
NCBI-ProteinID:
XP_010889461
UniProt:
A0A6Q2YVQ9
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Position
LG21:14416118..14487344
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AA seq
1815 aa
AA seq
DB search
MEMQRWSTRWKTKRWLMDSTITAFITLTLVLQATHVRAAAEPVDVLKVLEFHNAPEGVSR
TSGFCTNRRASKPDTAYRVGKQAQISAPTKQLFPGGVFPEDFSILTTLRPKAGIQSFLLS
VYSEQGVQQLGVEVGRSPVFLYEDQSGKPAPEDYPLFRSLNLADGRWHRVAISVEKQQVT
IIVDCKQKISKPLLRSGQSSINTNGITVFGTRILDEEVFQGDIQQLLIVADPKAAYDYCE
HYSPDCETPHGQSLQAQEPENEYTTTDDLDYTQFYDYSEVEGETETVPTNEYEAGSDPQL
NNVDGEYTDYTESELDYGTVEGTQTQSPIATSGPNQAVEEEEIVAGDYVFTGATPLGQEP
TGAPEAGPDAEDPGADAYDFKEYDVGAELGNKQYEYEVYDEYPNPTVTAEEEVGLGVPAE
TEELTQTAVVGGGEKGEKGEPAVIEPGMLIEGPPGPAGPAGLPGPSGLQGPPGVAGDPGD
RGPPGRAGLAGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGP
SGPMGLTGRSGPVGVPGSPGLKGDAGDPGPQGPRGIQGAPGQTGKSGKRGRAGADGARGM
PGESGSKGDRGFDGLPGLPGEKGHRGETGPIGPPGAPGEDGQRGEDGEIGPRGLAGESGP
RGLLGPRGPPGPTGQPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGP
PGEKGPQGRSGLAGLPGSDGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADGV
RGLKGGKGEKGEDGFPGFKGDMGLKGDRGEIGVLGPRGEDGPEGPKGRAGPNGESGPMGA
AGEKGKLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGG
RGARGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFSGPKGPPGPPGKDGLPGHPGQ
RGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGSAGKEGAKGD
PGPQGASGKDGPAGLRGFPGERGLPGASGPAGLKGGEGPQGPPGPVGSPGERGAAGPAGP
IGLSGRTGPQGPPGPAGEKGGPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGE
VGEPGQKGSKADKGEQGPPGPAGLQGPIGAPGPAGGDGEPGPRGQQGMFGQKGDEGSRGF
PGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGAQGPPGGVGAMGG
VGEKGENGEAGNPGTPGEPGTGGPKGERGDKGEAGPPGAAGPAGAKGPPGDDGPKGNPGP
VGFPGDPGPPGEAGVAGTDGTAGEKGEDGEPGQPGPPGPSGESGPPGPPGKRGPPGSAGA
EGRQGEKGAKGESGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGSSGQDGP
PGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDGGI
SGAAGPLGPPGPPGLPGPGGPKGAKGSTGPAGQKGDTGVIGPPGPPGPPGEVIQPLPIQS
PKKNRRHAEMQADAAGSMMDYGEGMENIFGSLNTLKLDIERMKYPMGTQNNPARTCKDLQ
LAQPEFSDGEYWIDPNQGCSGDSFSVYCNFTAGGETCIYPDKNSKGVPISSWPKEIPGSW
FSEFKNGQILAYVDSSGKTINEVQMTFLKLLTASARQNFTYNCHQSVAWHDETTDSYDKA
LRFLGSNDEEMSYDNNPYIRAITDGCATRKGYGKTVMEINTPKIDQVPIIDVMLNDFGDA
SHKFGFEVGPVCFLG
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggcttatggattccact
attaccgcattcatcactttaaccctggttctacaggctacacatgtcagagcagcagct
gaaccagtggacgtgctaaaagtattagaatttcacaatgcacctgaaggagttagtaga
acatcagggttttgcacaaaccgaagagcatctaagccggacacagcctacagagttgga
aaacaggcccagatcagtgcccccaccaagcagctattcccagggggtgtgtttcctgag
gacttctccatcctgaccaccctgaggcccaaggccggcatccagtccttcctgctgtct
gtttacagtgagcagggcgtccagcagctgggggtggaagtgggccgctcacccgtcttc
ctgtatgaggaccagagcggcaagcccgctccagaggactaccccctcttccgctctctc
aacctggctgacgggaggtggcatcgtgtggccatcagtgtggaaaagcagcaggtcacc
atcatcgtggactgtaagcagaagatctccaaacctctcctcaggagtggccagtcctcc
atcaacaccaatggcatcactgtgttcggaaccagaatattggacgaggaagtcttccag
ggtgacatccagcagctgttgattgtggccgatcctaaagcagcatatgactactgtgaa
cactacagccccgactgtgaaactccccacggccagtcactgcaggcccaggagccagag
aacgagtacactacaactgatgatttagattacactcagttctatgattactctgaagta
gaaggagagacagagactgttccaacaaacgagtacgaggccggtagtgaccctcagcta
aacaatgtagacggagagtacacagactatactgaaagtgagcttgactacggaactgta
gagggtactcaaactcagtctcccattgccaccagtggaccaaatcaggctgtggaggag
gaggagattgttgccggtgactatgttttcaccggagccaccccgctgggccaggagccc
accggggcgcccgaggccggtccggacgccgaggaccccggagcggacgcgtatgacttt
aaggagtatgacgtaggggccgagttgggcaataagcagtatgagtatgaggtgtacgat
gagtaccccaaccccacggttaccgccgaagaagaggtggggctgggggttcccgctgaa
acggaggaactgacccagactgccgtggtcggtggaggggagaaaggagagaagggcgag
cccgccgtgattgaacctggcatgctgattgaaggacctccaggaccagcgggcccagct
ggtctcccaggcccctctggtctacaaggacctcctggtgttgctggagatcctggtgac
aggggtcccccagggcgtgctggcctcgcaggagctgacggtttgccaggtcctcctggt
accatgctgatgctgccattccgttttggaggggacggagagaagggccctgtggtgtcg
gctcaggaggcccaagcccaggccatcctgtcccaggctagactcgctatgagaggtccc
tcaggtccaatgggtcttacaggaagatctggtccggtgggtgttcctggttctccggga
cttaaaggcgatgctggtgaccctggtcctcagggccccaggggaatccaaggggctcca
ggacaaacaggcaaatccggcaaaaggggtcgtgctggagccgatggtgccaggggaatg
cctggagagtccggctctaagggtgacagaggcttcgacggcctgcccggcctacctggt
gagaagggacacaggggtgagaccggaccaattggacctcctggagcccctggagaggat
ggacaaagaggtgaagacggagagatcgggccaaggggactggctggagaaagtggtcct
agaggtctgcttggaccacgcggtccacctgggcccactggccagcctggtgtggctgga
gtggacgggcctcccggtcccaaaggaaacatgggacctcaaggagagccgggacctccc
ggtcaacagggtatccctgggacacaaggtcttcctggtcctcaaggtcccatcggaccc
ccaggtgaaaagggacctcagggcaggtcagggttggctggtcttcctgggtcggatggg
cctcctggccatcctggtaaagagggtccgcctggtgagaaaggagccttaggccagcca
ggtccacagggtcctattggttatcctggacctcgcggtgtcaagggtgctgatggcgtt
cgtgggctgaagggtggaaaaggagagaagggcgaggacggtttccctggtttcaaggga
gacatgggtctcaaaggtgacaggggtgagatcggtgtgcttggaccccgtggtgaagac
ggacctgagggacccaagggtagggcaggccccaatggagagtctggcccaatgggtgct
gctggagagaagggaaaactgggtgttccaggattacccggttaccctggaagacaagga
ccgaagggttctagcggtttcccgggcttcccaggggccaatggagagaaaggagccagg
ggcgtggccggcaaacccggtccaagggggcaaagaggtccaacgggtccacgagggggt
cggggggcaagaggtccaacaggcaagccaggccctaagggcacagcgggcaatgatggt
ccaccaggcccgcctggcgagagaggacctcaaggaccccagggccccgtcgggttctca
ggaccaaagggcccccctggaccacctggaaaggatgggctgccgggccaccctggtcag
agaggagagacgggattccaaggaaagacaggtccacctggcccaggtggagttgttggt
ccacagggtccaacaggagagaccggcccgatcggtgaaagaggccaccctggaccccca
ggtccacctggagagcagggccttcctggatctgctggcaaagagggagccaagggagat
cctggaccccagggagcatccggcaaggacggccccgctggtctacgaggattccctgga
gagagaggtctacccggcgcgtctggtccagctggtttgaaaggaggagaaggtccccag
ggaccccctggcccagtgggctcccctggtgagagaggtgctgctggacctgctgggccc
atcggtctgtctggtagaaccggccctcaagggcccccgggtcctgctggggagaaggga
gggcctggtgagaaaggtcctcagggaccagctggtcgtgacggagtccaaggcccagtg
ggtctgcccggccccgccggacctcaaggtccaccgggagaggatggtgataagggagag
gttggagagcctggccagaagggaagcaaagcagacaagggtgaacagggtcccccgggc
ccggctggtcttcagggtcccattggggctccggggcctgctggaggtgatggagagccc
ggtcctcgcggtcagcaggggatgtttggacagaagggagatgaaggatccaggggtttc
cccgggccacctggccccatcggtctgcagggtcttcctggacctccaggcgagaagggt
gagaacggtgatgtcggcccaatgggtcctcccggcccccctggtccaagaggtcctcaa
ggtcctagtggagctgatggcgcgcaaggtcctcccgggggtgtgggtgccatgggaggc
gttggcgagaagggtgaaaacggtgaagctggcaaccccggcacacctggagagcctgga
actggaggtcctaaaggtgagagaggagacaagggagaggccggaccacctggagctgct
gggcccgctggcgccaaaggaccccctggagatgatggacccaaaggcaaccctggccct
gttggtttccctggagaccctggtccacccggtgaagctggtgttgcaggaactgatggt
actgcgggagagaaaggggaggatggagaacctggtcagcctggccctcctggtccttct
ggtgaatctggccctcctggtcctcccggaaagagaggccccccaggatctgccggtgca
gagggtagacaaggagagaagggcgccaagggtgagtccggagctgaagggcccccgggt
aaaactggtcccgttggcccccaagggccctcaggaaagcccggtccagaaggtctgcgt
ggaatccctggcccagttggtgaacaaggacttcctggatcttctggacaagacggccca
cctggacctatgggaccccctggtctcccaggactgaagggtgaccccggcagcaagggt
gaaaagggtcatcccggtctgattggtctcattgggccccctggtgagcagggagagaag
ggagatcgaggattacctggcccccaggggtctcccggaggcaagggcgacggcgggatc
agcggtgcagcaggccctctgggtcctcctggtcctcctggcttgcctggtcctgggggt
cctaagggagctaagggctcgaccggtcctgctggccagaagggagacactggtgtgatc
ggcccacccggtcctcctggtccccctggtgaggtaattcagccactgcccattcagtcg
cccaagaagaaccgccggcacgcagaaatgcaggcggatgcggcaggtagtatgatggac
tacggagagggcatggagaacatctttggctcgctcaacaccctcaaactggacattgag
aggatgaagtatcccatgggaacacagaataacccagccaggacctgcaaagacctgcag
cttgcccaaccagagttctctgacggggagtactggatagatccaaaccagggatgctca
ggggattctttctctgtctattgtaacttcacggccggaggagagacctgcatctaccca
gataaaaactccaaaggagtcccaatatcttcatggccaaaggaaatcccagggtcgtgg
ttcagtgaatttaagaatggtcaaatattagcatatgttgactcatcgggcaaaacaata
aacgaggtccagatgaccttcttgaaactactgactgcctcggccaggcagaacttcacc
tataactgccaccagtctgtagcgtggcacgacgagaccaccgacagctacgacaaagct
ctgcgattcctgggctccaacgacgaggagatgtcatacgacaacaacccttacatcagg
gcaatcacagatggatgcgcgacaaggaagggctatggaaagactgtgatggagattaat
actcccaaaatcgatcaggttcccatcattgatgtcatgctgaatgactttggagatgcc
agccataagtttggatttgaagtgggtccagtctgcttccttggctaa
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integrated database retrieval system
