Esox lucius (northern pike): 105023373
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Entry
105023373 CDS
T04894
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
els
Esox lucius (northern pike)
Pathway
els03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105023373 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105023373 (xab2)
03041 Spliceosome [BR:
els03041
]
105023373 (xab2)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105023373 (xab2)
Spliceosome [BR:
els03041
]
Complex B
Other components
Prp19-related factors
105023373 (xab2)
Complex C
105023373 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_2
TPR_12
TPR_15
ARM_TT21_C
ARM_TT21
TPR_MalT
NRDE-2
TPR_1
Tcf25
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
105023373
NCBI-ProteinID:
XP_010890822
UniProt:
A0A6Q2WRG2
LinkDB
All DBs
Position
LG11:complement(17860795..17870755)
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AA seq
852 aa
AA seq
DB search
MPSLNGKSEVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPAYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCGKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDEDDDMDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENDQLDDARTIFEKATKVN
YKQVDDLAAVWCEHGEMELRHENYDQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDDTERHQMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNASGTISDLAPGQMGVDDMKLLEQQAQQLAVEAEM
DKPKIKEKILFVRSDTSRSELAELAKQANPDEIDIDDDDEEDGDEDQGPDEVQLEQKSVP
TAVFGGLKEGED
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctcttaatgggaaatcggaagtcatgtttgaagaagatgacctgccttacgag
gaggagatcatcaggaatccgtattcggtcaagtgctggatgcgctacatcgagttcaaa
cagaacggcgccaagtccattctcaacatgatctatgaacgagcgctcaaagagctccct
ggcagttacaagttgtggtacaactacctgagagagagacggaaacaggtcaaagggaag
tgcatcacggagccagcctatgaggaggtcaacaactgccatgaaagggcactggtcttc
atgcacaagatgccgaggatctggctggactactgtcagttcctggtgtctcagtgtaag
atcaccagaagcagacgcacgtttgacagagcgctccgagccctgcctgtcactcagcac
ccccgcatctggcccctgtaccttcgctttgcccggaacctgcccctgccggagaccgcc
atccgcgtctatcgtaggtacctcaagctgtccccggagaacgcggaggagtacatagac
tatctgcgttcctgcggcaagttagacgaagcagcagtgcgcctagcagccgtggtcaac
gatgagagctttgtgtccaaggagggcaagtccaactaccagctatggcacgagctgtgt
gacctgatctcccagaacccagacaaggtgacctccctgaacgttggcgccatcatccgc
ggaggcctcacccgcttcacggaccagctgggcaaactctggtgctccctggcggactat
tacatccgcagtggccactttgaaaaggcccgggacgtgtacgaggaggccatcttgacg
gtggtgacggtgagggatttcacccaagtgttcgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagaccacctcggagatgggcaaagatgaagacgatgacatg
gacctggagctgcgtctggcccgctttgagcagctgattgcccgcaggcccctgcttctg
aacagtgtgcttctgagacagaacccccataacgtccacgagtggcacaagcgcgtcaaa
ctgtacgatgggaacccgcggcagatcatcaacacgtacacggaggcggttcagaccgtg
gacccgatgaaggccacagggaaaccccactccctttgggtctccttcgccaagttctac
gaggagaacgatcagctggacgacgcgcggaccatctttgaaaaggccaccaaggtgaac
tacaagcaggttgacgacctggctgcagtgtggtgtgaacatggcgagatggaactgcgc
cacgagaactatgaccaggctctgcgcattctgaggaaagccacagccatcccgtccaag
aaggctgagtactttgatgtttccgagccggtgcagaacagagtgtacaagtccctgaag
gtgtggtccatgctggccgacctggaggagagtttggggaccttccagtctaccaaggcg
gtgtacgaccgcatcattgacctgcgcatcgccacaccccagatcatcatcaactatgcc
atgttcctggaggagcacaactactttgaggagagctttaaggcgtacgagcgtggcatc
gccctcttcaggtggcccaatgtctacgacatctggaacacctacctcactaaattcatt
gaccgctatgggggcaagaagctagagagggcccgtgacctgttcgaacaggcgctggac
ggctgcccggccaagttcgccaagaccatctacctgctgtatgccaagctggaggaggag
tttggcttggcccgtcatgccatggcagtgtacgagagggccacgcaggctgtggatgac
acggagcgccatcaaatgttcaacatctacatcaagagggccgccgagatctatggagtc
acctacacgagagccatctaccagaaggccatcgaggtccttccagatgaacactcccgg
gacatgtgtctgcgcttcgctgacatggagagcaaactgggtgagatcgaccgtgcccgg
gccatctactcctactgctcccagatctgtgacccaaggatgacggccacgttctggcag
acatggaaggagtttgagatccgtcacggcaacgaagacacgatccgtgagatgctcagg
atcaagcgcagtgtccaggccacgtacaatacgcaggtcaacttcatgtcttcacagatg
atgaaggccaccaccaacgcctccggcaccatctcagaccttgccccgggccagatgggt
gtggacgatatgaagctcctggaacagcaggcccaacagctggctgtcgaggctgaaatg
gacaaacccaaaatcaaggagaagatcctgttcgtcaggagtgacacgtctcgcagcgag
ttggctgaactggccaaacaggccaaccctgacgagattgatattgatgacgatgatgag
gaggatggtgatgaagaccagggcccagatgaggtgcagctggaacagaagagtgtcccc
acggctgttttcggagggctgaaggaaggagaggactga
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