Esox lucius (northern pike): 105024285
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Entry
105024285 CDS
T04894
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
els
Esox lucius (northern pike)
Pathway
els03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105024285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105024285
03036 Chromosome and associated proteins [BR:
els03036
]
105024285
Enzymes [BR:
els01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105024285
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105024285
mRNA degradation factors
5'-3' decay
Decapping complex
105024285
Chromosome and associated proteins [BR:
els03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105024285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
105024285
NCBI-ProteinID:
XP_010892439
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All DBs
Position
LG20:complement(21061433..21072475)
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AA seq
487 aa
AA seq
DB search
MATAKTENPMSIMGLNKTNGQLRGPPKPVGLMSGPLATAPQPQASQKGGSIPQGSGGIKF
GDDWKKSLQLPAKDCRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQLS
KHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLSKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKSLYVAEFHSADPDAEDKEMSGK
HCELSAA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcaaaaacagagaatccaatgtcaattatgggactaaacaagaccaatggg
cagctcagaggaccacccaagcctgttggacttatgtcaggacctctggcaactgcccca
caaccacaggcctctcagaagggaggtagcattccccagggtagtggcggcatcaagttt
ggtgatgattggaagaagagcttgcagcttccagctaaagactgcagagttagaacttca
gatgtgacatcgaccaaggggaatgagtttgaggactactgcttgaagcgggagctactg
atggggatttttgagatgggctgggagaaaccctctccaattcaggaggaaagcatcccc
attgctctgtctggcagagatattctggctcgggctaagaatggcactgggaaaagtgga
gcttacctcattcctctcctggagaggattgacctgaagaaggaccacatacaggccctg
gtgatggttcctacacgggagttggcccttcaggtcagccagattagcatccagttgagc
aaacatctgggtggggtcaaggtcatggccaccacaggaggcaccaacctgagggatgac
atcatgcgtctggacgaaactgtgcatgtggtgatagccacaccaggcaggatcttggac
ctgataaaaaagggtgtggccaaagttgataaagtccagatgatggtgatggatgaggct
gacaagctgctttctcaggactttgtggtccttatcgaagacatcatcagtttcctggcc
aagggtcgtcagattctgctttactctgccaccttccccatcagtgtgcagaaattcatg
gcgaagcacctttcgaagccctatgagatcaacctgatggacgaactgactctgaaaggc
atcacccagtattacgcctacgtcactgagaggcagaaagtccactgtctcaacacactc
ttctccagactccagattaatcagtccatcatcttctgtaactccacccagagggtggag
ctactggccaagaagatcacccagctaggctactcctgcttctacatccatgccaagatg
atgcaggagtacaggaaccgtgttttccatgatttcagaaatggactctgcaggaacttg
gtctgcacagatctgttcaccagaggaattgatatccaagctgtgaacgtggtcatcaat
tttgatttccccaagaacgctgagacatacctacatcgcattggcagatcagggcggttt
ggtcacctgggtctggccataaacctgataacctctgaggaccgcttcaacctgaagtca
atcgaggaccagcttgtgaccgacatcaagcccatccccggcagcattgacaagagcctg
tacgtggcagagttccactctgctgatccagacgccgaagacaaggagatgagcggcaag
cactgtgagcttagtgcagcataa
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