Esox lucius (northern pike): 105024419
Help
Entry
105024419 CDS
T04894
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X3
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
els
Esox lucius (northern pike)
Pathway
els03013
Nucleocytoplasmic transport
els03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105024419
03015 mRNA surveillance pathway
105024419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105024419
Enzymes [BR:
els01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105024419
5.6.2.5 RNA 5'-3' helicase
105024419
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105024419
mRNA cycle factors
Common to processing body (P body) and stress granule
105024419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
105024419
NCBI-ProteinID:
XP_012986878
LinkDB
All DBs
Position
LG03:complement(9159283..9170758)
Genome browser
AA seq
1103 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTGQTQSQLDNQVNGP
DGVLQNGDDSVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AINPGGRFMSTAMYDAREALIPGSVYDRSSTGRTSNMYFQTHDQIGMIGTGPGQMASVNI
PIPFNLVMPPIPPPGYLGQVNGPQVGRGGGMKGKAAGGAVARGSRQRSRGMGAHGGGNGQ
QGHAGPSQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSSYQGERAYQHGVTGLSQY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacaccgaggaa
gcggagttgcttggagcagacacccagggttcggagtatgagttcacggattttacactg
ccgagccagactcaaacaggccaaacccaaagtcaattggacaaccaggtaaatgggcca
gatggggttttgcagaatggcgacgactctgttgtaaaagcaagtcaacttcttgcagag
ttgaactttgaagaagatgaggaggacacctactatactaaagacctcccagtccacgcg
tgcagttactgtggaattcatgacccggcttgcgtggtgtattgcaacactagcaagaag
tggttttgcaatggccgtggcaatacatctggcagtcacattgtgaaccacttggttaga
gccaagtccaaggaggtgacactgcacaaggacggccctctgggggagacggtgctggag
tgttacaactgtggctgtcgaaacgtcttcctcctgggcttcatccccgccaaggcagac
tctgtggtcgtactgctgtgcagacaaccatgcgccagtcagagcagcctgaaggacatc
aactgggacagctcccagtggcagccgctgatccaagatcgttgcttcctgtcctggctg
gtgaagatcccctcagagcaggagcagctccgggctcgccagatcaccgcccagcagatc
aacaagctggaggagctctggaaggaaaacccgacagccactctggaggacctggagaag
cccggtgtggacgaggagccccagcacgtgctgctgcgctacgaggacgcctaccagtac
cagaacatctttggcccgctggtcaagctggaggctgattatgacaaaaagctcaaagag
tcccagacccaagacaatataactgtcaggtgggacttggggctcaataaaaagcggatt
gcctatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggtgatgag
atctgcctgcggtacaagggagacctggccccgctctggaagggcatcggccacgtcatc
aaagtcccagacaactacggtgatgagatcgccattgagctgcggagcagcgctggggcc
cctgtagaagtaccgcacaacttccaggttgactttgtgtggaagtccacctctttcgac
aggatgcagagcgcccttaagacctttgccgtggacgagacctcggtgtcggggtacatc
taccacaagctgctgggtcacgaggtggaggacgtggtcatcaagtgtcagctgcccaag
cgcttcactgcccagggcctgccagacctcaaccactctcaggtgtatgctgtgaagacc
gtgctgcagcgtcctctcagtctcatccaggggcctcctggcaccggaaaaaccgtcacc
tcagctaccgtggtctaccacctggcccgccagggcaacgggcctgtgctggtttgtgct
cccagtaacattgcagtggaccagctgactgagaagatccacatgtcaggcctgaaggtg
gtcaggctgtgtgccaagagtagagaggccattgactcccctgtgtccttcctggctctg
cacaaccagatccgtaacatggacagcatcccagagcttcagaagctgcagcaactgaag
gatgagactggggagctctcttcctctgatgagaagcgctaccgggcccttaagcgcacc
gccgagagggaactactcatgaatgcggacgtgatctgctgtacctgcgtgggggccgga
gaccctcgtctggccaagatgcagttccgctccatcctcatcgatgagagcacccaggcc
acggagccagagtgcatggtgcctgtcatactgggggccaagcagctgatcctggtgggg
gaccactgtcagctgggcccggtggtgatgtgtaagaaggcggccaaggccggcctgtcc
cagtccctgtttgaacggctggtggttctgggcatccgacccatccgcctgcaggtccag
taccgcatgcacccggccctcagcgccttcccctccaacatcttctacgagggctccctg
cagaacggcgtcaccgccgctgaccgcatcaagaagggctttgacttccagtggccacag
cctgacaagcccatgttcttctacgtcacccagggccaggaggaaatcgcaagctccgga
acctcttaccttaacaggactgaggcttccaatgtggaaaagatcaccacccggctgctg
aaggctggagccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tacctggtgcaatacatgcagttcagtggttccctccacaccaagctctaccaggaggtg
gagattgccagcgttgatgccttccagggcagagagaaggacttcatcatcctgtcgtgt
gtccgagccaatgagcaccagggcatcggcttcctgaatgacccgcgccgcctcaacgtg
gctcttactagggccaggtacggggtgatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccacctgctcaactactacaaggagcagaaggtcctggtggaggga
cccctgaacaacctgagggagagcctgatgcagttcagcaagccccgcaagctggtcaac
gccatcaaccctgggggacgtttcatgagcaccgccatgtacgatgcccgggaggctctg
attcctggatctgtgtacgaccgtagcagcaccggacgtacgtccaacatgtacttccag
acccacgaccagatcggcatgatcggcaccggccccggccaaatggcctctgtgaacatc
cccatccccttcaacctggtcatgccccccatacccccgccaggctacctgggccaggtg
aacggcccgcaggtggggcgcggtggaggcatgaaggggaaggcggcggggggtgccgtc
gctcgaggaagccgtcagaggagccgtggcatgggggcgcacggtgggggcaacgggcag
cagggccacgccggacccagccaggacctgggctcccagcccttctcccaggggcccctc
acccagggctacatcaacatgagccagccctcccagatgagccagccgggcctctcccag
cccgaactgtcccaagacagttaccttggcgatgagttcaagtcccagattgacgtggcc
ctctcccaagactccagctaccagggggagagagcatatcagcatggtgttactggactg
tcccagtactag
DBGET
integrated database retrieval system
