Esox lucius (northern pike): 105025497
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Entry
105025497 CDS
T04894
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
els
Esox lucius (northern pike)
Pathway
els03013
Nucleocytoplasmic transport
els03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105025497 (upf3b)
03015 mRNA surveillance pathway
105025497 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105025497 (upf3b)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105025497 (upf3b)
mRNA cycle factors
P-body specific factors
105025497 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
DUF1924
Motif
Other DBs
NCBI-GeneID:
105025497
NCBI-ProteinID:
XP_010894518
UniProt:
A0A3P8YXI0
LinkDB
All DBs
Position
LG04:26754036..26758328
Genome browser
AA seq
484 aa
AA seq
DB search
MKEDKENTRPREKRMEIKSEDGEKTEKPKPEKKEAMTKIVIRRLPPSITKEELEEQLQPL
PEVDYLEFFSNDSSMYPHVFARAYINFKNQEDIVLFRDRFDGYVFIDNKGQEYPAIVEFA
PFQKIAKKRSKKKDAKSGTIDEDADYKKFLEIYNGDDEKFTSTPETLLEEIEAKTKELVA
KKTTPLLDFLKNKQRMREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKFKKGD
KPADKDKDQAKEEPKIKLLRKPDRDDLDVENPKEKSKKPEKDKMKEDRAPGIPDLKKRQN
HETREDRGSRKADEDGHRDSHRDGHKDFRERDVERNRDRDRERDRERERRQKEKERIRRQ
DEDRRRRRERHDGENTYRKREEEWKKEKGERVWEKKKAENAVDSASHTSCHTDRPKKSEE
TLREEKAKRDRLRNKDRPAIQLYQPGARNRGARGGGAGGGGGESYAADRKSESETKRSQE
KGDE
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaggaaaacactcgtccgagagagaaaagaatggagataaaaagcgaa
gacggtgaaaaaacagagaagccaaagccggagaagaaagaagcaatgactaagattgta
atccgacgtctgcctcccagtataactaaggaggaactggaggaacaattgcagccactt
ccagaagtggactacctcgagtttttctccaatgacagcagtatgtacccccatgtgttc
gccagagcatacatcaacttcaagaatcaggaagatattgtccttttcagagaccggttt
gatggatatgtgtttattgataataaagggcaagagtatccagcaattgttgaattcgct
ccttttcaaaagattgccaaaaaaaggagtaagaaaaaggatgccaaaagtggaacaata
gacgaagatgctgactacaaaaagtttctggagatttacaatggtgatgatgaaaagttt
acatccacccctgagactctactggaagaaatagaggcaaaaacaaaggaattagtagct
aagaaaacaactcccctcttggacttcttgaagaataaacagagaatgcgtgaggaaaag
aaagaggaaaggaggagacgagagctcgagcgcaagcgcctgcgggacgaggagcgtcgg
aagtggagggaggaggacaggaggaagcgcaaagaagcagagaagttcaagaaaggagat
aaacctgcagacaaagataaagatcaagccaaggaggagccaaaaatcaagctcctgaga
aaaccagacagagatgacctggatgtggaaaaccctaaagagaagtcaaagaaacctgag
aaggacaagatgaaggaggacagagctccagggattcctgatcttaagaagcgtcaaaac
catgaaaccagagaggatagagggtcccgaaaagctgacgaagatggacaccgggacagt
cacagagatggacacaaggatttcagggagcgggatgtggaacgaaacagggacagggac
cgcgaacgagaccgggagagggagcggcggcagaaagagaaggagcgcatcagacgtcaa
gacgaggatcggcggaggagaagagaacggcacgacggggagaacacctacaggaagcga
gaagaggaatggaaaaaggagaaaggagaacgcgtctgggaaaagaaaaaggctgaaaat
gccgtggactcagcaagccatacttcttgccacaccgataggcctaaaaagtctgaagaa
actctgagggaagaaaaagctaagagagatcgtttaagaaacaaggatcggcccgccatt
cagctttaccaaccaggtgccaggaacagaggagctcgaggaggaggtgctggtggcgga
ggtggagaatcttatgctgccgacagaaagtcagagagcgaaaccaagagatcccaagag
aagggagatgaataa
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