Esox lucius (northern pike): 105026208
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Entry
105026208 CDS
T04894
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
els
Esox lucius (northern pike)
Pathway
els03013
Nucleocytoplasmic transport
els03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105026208 (upf1)
03015 mRNA surveillance pathway
105026208 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105026208 (upf1)
Enzymes [BR:
els01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105026208 (upf1)
5.6.2.5 RNA 5'-3' helicase
105026208 (upf1)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105026208 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
105026208 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
ATPase
SLFN-g3_helicase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
UvrD_C_2
AAA_16
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
105026208
NCBI-ProteinID:
XP_012990317
LinkDB
All DBs
Position
LG08:complement(3121693..3137562)
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTASLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGVGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQMGMIGAGPA
HMGAMNMPIPFNLVMPPMPPPGYLAQSNGPAAGRGGALKGKAGRGGRQRTRGMGNHGGSG
QGNGPTSQASQSISSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttctcaaacgctcaccttcctggacacggaggaa
acggagctacttggagcagatacacagggctcggagtacgagtttaccgattttacttta
cctagccagacacaaactcaaggccaaacccaaagtcaactggacaatcaggtgaatggt
cccgatgaaggactccacaatggaggggtggatgatgtggccaaagctagccaactcctt
gctgagttaaactttgaggaggacgaggaggacacctattacaccaaagacctcccgctg
catgcctgcagttactgtggcatccatgatccggcatgtgtagtttactgcaacacgagc
aagaagtggttctgcaacggacgcggcaatacgtctggcagccacatcgtcaaccacttg
gtgagggccaaatgtaaagaggtgactctgcacaaagacgggcccctgggcgagacggtg
ctggagtgctacaactgcggctgtcgcaatgtcttcctcctgggcttcatccctgccaag
gcagactctgtggtcgtactgttgtgcaggcagccatgtgccagtcagagcagcctgaag
gacatcaactgggacagctcccagtggcaaccgctgatccaagaccgctgcttcctgtct
tggctggtgaagatcccctcagagcaggagcagctccgggctcgccagatcaccgcccag
cagatcaacaagctggaggaactctggaaggacaatcccacagccagtctggaggacctg
gagaagcccggcgtggacgaggagccacagcatgtgctgctgcgctacgaggacgcctac
cagtaccagaacatcttcggcccgctggtcaagctggaagccgactacgacaagaagctt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctcaataaaaag
cggattgcctatttctccctgcccaagacggattcaggtgacatgaggctgatgcaggga
gatgagatctgcctgcgctacaaaggagacctggcccccctctggaagggcgttgggcat
gtcatcaaagtccccgacacaccctttgtgaaagactatggagatgagattgctatagag
ttgcgcagcagtgtcggggcgccagtggaaataccccataacttccaggtggattttgtc
tggaagtccacctcctttgacaggatgcagagtgctctgaagaccttcgccgtggacgag
acatccgtgtcgggctacatctaccacaagctgctgggtcacgaggtggaggacgtggtc
atcaagtgtcagctgcccaaacgcttcactgcccagggcctgccggacctcaaccactct
caggtgtatgctgtgaagacggtgctacaaagacctctcagtctcatccaggggcctccc
gggactggcaaaacggtcacttctgccaccatcgtctaccacctggccaggcagggcaac
gggcctgtgctggtttgtgctcccagtaacattgcggtggatcagctgaccgagaagatc
cacatgtcgggcctgaaggtggtgaggctgtgtgctaagagcagggaggccattgactcc
cctgtctccttcctggctctgcacaaccagatccgcaacatggacagtatgccagaactg
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtccgctgacgagaagcgc
taccgggccctgaaacgcaccgctgagagggagctgctcatgaatgcggatgtgatctgc
tgcacctgtgtgggggccggagaccctcgtctggccaagatgcagttccgctccatcctg
atcgatgagagcacccaggccacggagccagagtgcatggtgcctgtggttctgggggcc
aagcagctgatcctggtgggggaccactgccagctgggcccggtggtgatgtgtaagaag
gcagccaaggccggcctgtcccagtccctgtttgaacggctggtggttctgggcatccga
cccatccgcctgcaggtccagtaccgcatgcacccggccctcagcgccttcccttccaac
atcttctacgagggctccctgcagaacggcgtcacggctgctgatcgcatcaagaaaggc
tttgatttccagtggccacagccagacaagcccatgttcttctacgtgactcagggccag
gaggaaatcgctagctctgggacatcctacctgaacagaactgaggcagccaatgtggag
aagatcaccaccaggctgctgaaggctggggccaagcctgaccagataggcatcatcacc
ccctatgagggccagaggtcctacctggtgcaatacatgcagttcagtggttccctccac
accaagctctaccaggaggtggagattgccagcgtggacgcgttccagggcagggagaag
gacttcatcatcttgtcttgcgtcagagccaatgagcaccagggcatcggcttcctgaac
gaccctcgccgtctcaacgtggccctcaccagagccaagtacggggtgatcattgtgggc
aaccccaaggccctgtccaagcaacctctgtggaaccacctgctcaactactacaaggag
cagaaggtcctggtggagggacccctgaacaacctgagggagagcctgatgcagttcagc
aagccccgcaagctggtcaacgccatcaaccctggagcccgcttcatgagcactgccatg
tatgatgcccgggaggccctcatccctgggtctgcctacgaccgcagcagcgcagggcgt
ccatccaacatgtacttccaaacccatgaccagatgggcatgattggggcggggccagcc
cacatgggggccatgaacatgcccattcccttcaacctggtgatgcctccgatgcccccc
ccagggtatctggctcagtccaacggcccggctgcaggtcgtggtggggcactgaaaggc
aaagcaggccgtggggggcgccagaggacccgggggatggggaatcacgggggcagcggg
cagggcaatgggcccaccagtcaggccagccagtccatatcttcccagcccttctcccag
gggcctctcacccagggctacatcaacatgagccagccttcccagatgagccagccaggc
ctctcccagcctgaactgtcccaggacagttatctgggtgatgagttcaaatcccagatc
gacgtggctctgtcccaggactccacctaccagggtgaacgtgcgtatcagcacggaggc
gtgacagggctgtcacagtactaa
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