Esox lucius (northern pike): 105026322
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Entry
105026322 CDS
T04894
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
els
Esox lucius (northern pike)
Pathway
els04510
Focal adhesion
els04512
ECM-receptor interaction
els04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
els00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105026322
04518 Integrin signaling
105026322
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105026322
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105026322
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105026322
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
105026322
NCBI-ProteinID:
XP_010896001
UniProt:
A0A6Q2XVE2
LinkDB
All DBs
Position
LG12:31700032..31724845
Genome browser
AA seq
1488 aa
AA seq
DB search
MFSFVDSRTVLLLLASQVVLLSIVRCQEDDQEAGGCIQDGHGYNEKDVWKPNPCRICVCD
GGTVLCDDIICEEMTMCANPIIRPGECCPICPADASTPIEAVVGAKGQKGEPGDIADVVG
PAGPAGPMGPPGEQGPRGEVGLKGDKGNVGPRGRDGEPGIPGNPGPPGPPGPNGAPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAG
ALGPRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
SKGESGAAGAKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPG
AKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPAG
PQGAPGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPG
LAGAKGSTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGSPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEAGKTGEKGLVGRPGLIGLAGKDGETGAVGPHGPPGPAGERGEQG
APGPSGFQGLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGSDGPKGAIGPAGGAGAQGPPGLQGMPGERGAGGIPGAKGDRGDNGEKGPEG
APGKDGSRGLTGPIGPPGPSGPNGNKGETGPSGPTGAAGARGAPGDRGEVGPPGPAGFAG
PPGADGQPGAKGELGESGQKGDAGAPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATG
FPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDTGLPGRQGDAGLRGPAGAPGEKG
DAGEDGKPGPDGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGASGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPG
PVGPLGKQGDRGESGAQGPAGPAGPAGARGMAGPQGPRGDKGESGETGERGQKGHRGFTG
LQGLPGPPGPAGDQGAAGPAGPSGARGPAGPSGPAGKDGSSGTPGPLGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDS
TLKSLNSQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGEYWVDPNIGSTADAIKVFCNM
ETGETCVYPSIANVPQKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLR
LLSTEASQSLTYHCKNSVAYMDAATGNLKKALLLQGSNDVEIRAEGNSRFTYSVVKDDCK
KHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttctagcatcccaagttgtttta
ctatccattgtcagatgtcaagaggatgaccaggaggcgggcggctgcatccaagacggc
catggctataatgagaaggatgtgtggaagccgaacccatgccgtatctgtgtgtgtgac
ggcgggacggtgctgtgtgatgacatcatctgcgaggagatgacaatgtgtgccaacccc
atcatccgacccggagagtgttgccccatctgccctgctgatgccagcacacctattgag
gcggtggttggtgctaagggccagaaaggtgaaccaggcgatattgcagatgttgtagga
ccagctggaccagcaggccctatgggccccccaggagagcagggaccacgcggagaagtt
ggacttaagggtgataagggaaacgttggccccagaggtagagacggagagcctggcatc
cccgggaaccctgggccccctggcccccctggacccaatggagccccaggcctcggtggg
aactttgctgctcagatggctggtggatttgatgagaaggctggtggagcccagatggga
gtgatgcaaggacctatgggccctatgggtccccggggcccccctggcccttcaggagcc
cctggcccacaaggtttccaaggtaaccccggagagactggagagcctggcccggctggg
gcactgggaccacgcggaccccctggaccttctggcaaaccaggaagtgatggtgaggct
ggcaaacctggaaaggctggtgagcgtgggcccgctggacctcagggagcacgtggattc
cctggaactcctggtcttcccggaatcaaaggacacagaggtcaccctggtctggatgga
tctaagggagaaagcggtgcagctggagccaagggtgaggctggtgcccccggggagaac
ggagcccctggaccaatgggaccacgcggtctgcctggcgagagaggccgtcctggacct
tctggagctgctggtgcccgcggtaatgatggcttacctggccctgctggtcctcctggg
cctgtgggacctgctggagcacctggtttccctggatctcctggtgccaagggagaagct
ggacccactggtgcccgtggagctgagggagcccagggaccccgcggagaggctggcaca
cccggatcgcctggacccgctggtgcctctggcaaccctggtactgatggtattcctgga
gctaaaggatctgctggcgcctctggtattgctggtgcacctggtttcccagggccccgt
ggcccccccggacctcagggagcaacagggcctcttgggcccaagggacagtcgggagac
cccggtattcctggtttcaaaggagaggccggacccaagggagagcttggccctgccggt
ccccaaggcgcccctggccccgcaggagaggagggcaagagaggaccaagaggagagccc
ggtgctgctggaccacttgggcctcctggcgagagaggagcacctggtaaccgtggtttc
ccaggacaggatggtcttgctggtgctaagggagcccctggagaccgtggcgtacccggc
ctggccggtgccaagggaagcactggtgacccaggacgcactggagagcctggtctcccc
ggcgctagaggtctcactggtcgccctggtgatgctggtcctcaaggcaaagtcggccct
ggtggttcccctggtgaggacggtcgccccggcccaccagggcctcagggagcccgtggc
cagcctggagttatgggattccccggaccaaagggagccaatggtgaggctggcaagaca
ggagagaagggtctcgtgggtcgtcctggtctgataggtctggctggtaaagatggtgag
actggcgctgttggacctcacggccctcctggacctgctggtgagagaggagaacaggga
gcgccgggaccttctggcttccagggtctgcccggacctgccggccccccaggagaagga
ggcaagcctggcgacgcgggtgtccctggagaggctggtgctgctggtgccacaggaccc
agaggcgaacgtggattccctggcgagaggggcggcgccggacctcagggtctgcaggga
cctcgtggacttcctggaactcccggatcagatggaccaaagggagccattgggccagct
ggtggtgctggagctcagggaccacccggcctgcagggcatgccaggagagagaggagct
ggtgggatccccggagccaagggtgacagaggtgacaatggcgagaaaggacccgagggc
gctcctggaaaggacggttctagaggtttaactggtcctattggcccacccggcccatcc
ggtcccaacggaaacaagggtgagactggaccttctggcccaaccggagctgctggtgcc
cgtggtgctcccggtgaccgtggtgaggttggtcctcccgggcctgctggctttgccggt
cctcctggtgctgatggtcaacctggagctaagggagagttgggtgagagcggacagaag
ggagatgccggtgcccctggacctcagggaccttctggtgcccctggacctgtgggaccc
actggtgtgtctggacctaaaggagctcgtggtgcccagggtgcccctggtgctactggt
ttccctggtgctgctggaagagtcggatctcccggtcccaatggtaaccctggtgctgct
ggccctgctggccctgctggtaaagatggtcctaagggagtccgtggtgacactggcctc
ccaggcagacagggagacgctgggctgcgtggacctgctggtgcccctggcgagaaggga
gatgctggagaggatggtaaacctggtcctgatggtccttcaggtccccaaggtctggca
ggctctcggggtattgtgggtctgcctgggcagcgtggagagaggggcttccctggcctt
cctggaccttctggagaacccggtaagcagggtgcttctggtgctagtggtgaccgtgga
ccccctgggcctgtgggaccccctggattgactggtcctgctggagagcctggaagagag
ggcaacgctggctctgacgggccacctggtagagatggatcaactggtgtcaagggtgag
cgtggtaacacaggtcctgctggtgctcctggtgcccccggcgctcccggtgcccccggc
cctgtgggtcccttgggcaagcagggagacagaggagagtcgggtgctcaaggacccgcc
ggacccgctggacccgctggtgctagaggaatggctggaccccaaggacctcgcggagac
aagggagagtctggcgagacaggagagaggggccagaagggccaccgtggcttcaccggt
ctccagggtcttcctggacctcctggccccgccggagaccaaggagctgctggacctgcc
ggaccaagcggcgccaggggacctgctggcccatccggccctgctggtaaagatggatct
agcggtaccccaggaccccttggaccccctggacctcgtggtcgttctggagagactggt
cctgctggtcctcctggtaaccccggaccccccgggccccccggtcctcctggccctggc
atcgacatgtctgccttcgccggcctgtctcagcctgagaagtcccccgatcccctgagg
tacatgagggccgacgaggcatccagctccctgaggcagcacgatgtggaggtggactcc
acactcaaatccctcaacagccagatcgaaaacctgcgcagccccgacggtagccagaag
aacccggcccgcacctgcagagaccttaaactgtgccaccccgagtggaagagcggcgaa
tattgggtggatcccaacattggcagcacagccgacgccatcaaggtcttctgcaacatg
gagaccggcgagacctgtgtgtaccccagcatagccaacgtgccacagaagaactggtgg
accagcaagagcaaagaccgcaaacacgtctggttcggagagaccatgaacggaggattc
cacttcagctacgctgaggacggaaccaatgcagccagtatccagctgaccttcttgagg
ctgctgtccacagaggcttctcagagcctcacctaccactgcaagaacagcgtggcctac
atggacgcagccaccggcaacctgaagaaggccctgctgctccagggctccaacgacgtg
gagatcagagccgagggcaacagccgcttcacctacagcgttgtgaaggacgactgcaag
aaacacacaggccagtggggaaagactgtcttcgagtacaaaacacagaagacctctcgt
ctgcccatcgtggacattgcccctatggacattggaggagcggaccaggagtttggcgtg
gacgtgggagcagtctgcttcttgtaa
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