Esox lucius (northern pike): 105027605
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Entry
105027605 CDS
T04894
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
els
Esox lucius (northern pike)
Pathway
els03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105027605 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
els03032
]
105027605 (topbp1)
03400 DNA repair and recombination proteins [BR:
els03400
]
105027605 (topbp1)
DNA replication proteins [BR:
els03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
105027605 (topbp1)
DNA repair and recombination proteins [BR:
els03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
105027605 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
105027605
NCBI-ProteinID:
XP_010898066
LinkDB
All DBs
Position
LG21:complement(27198148..27231117)
Genome browser
AA seq
1539 aa
AA seq
DB search
MSKGDREDFVVKFVEVNGRKTDLDVKAYEAILALQSEKYLKTIDEETALQLDHNDKSLFV
FSSFSTPAFQHCKELGCRMVSPLVVLFCLQQQRCVPKAELPVYNMAMADVTISCTSLDKE
ARTDVMDLVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPIVLPSWVKTCWEKS
QDSLFRHTDLPIEDYLCPVLRGCTICVTGLSSMERKEVQRLCQQHGASYTGQLKMNECTH
LIVSEPTGQKYECARKWNIFCVSLHWLFDSIEKGFCQDESRYTVERGVQKATKPHTSTPT
GTSSKREEGASLLGLSHISVNNSRTVNDTAMTNATESRLDTPDPIDALDITVCTSDDLLD
GCKLFLCGLPGKKLEKLRRLVNMAGGLRFNQASEELTHVVMGEIDQDIKTFLAKATHRPY
VVTVQWLLDSFSRGSRLPEGDYHHPACLPPVPEAVAMPAPRASASRASASEAPAASEPAT
PQHRKAEEDMLSQYMDEDPTVVEMPQPADSSAATEEQSWVSAPDPPSAASRASADSTMQE
PSQAGLFVGKRFLLVGFGAEAEAQLSMLVTENCGKVLVRRSRAVADYAVVPLLGCEVEAT
VDEVVTDTWLAMCVEQQCVLELASHPLFSPVPVMEGHSPLSDCVLSVSQFTGAERESLVE
LAKHLGASVQDYFVRAANKRKGMLASTHLVLRSPEGTKYQAAQKWGLPSVTLRWVLESAR
TGLRAEERHFLVDLPPSPEREEESFVGGSQKPSMPPPLSMNKSPEIPLLGPQSGAGVTPL
DVGRFQSKVFRSVLEQGGCEEDSTTPGLQEGGRKAGGAKDSPALQLDTPSRFLCRDQLFR
PNFNVKDALAALDTPGGRTEQGPVVTPLSEVIGRNLKVALANSTRGNAPDLQALSASPQL
RKDAHKKAEEAAPLAGVVICVSKKLSKQQGELNAVAASLGADFRWSCDDTVTHYIYQGRA
GDNTREYRGVKERRVHVVSQHWLQACAEEQTHVSESLYPFTYNPKMSLNLSRVPPDSSQR
CAPATRTSLPRFPLQSQEENTRQPEDTVEDATMSHPVNERETDREPSQDNAEKRDLCETL
EMRENLQRQLQEIMSATKITTGRRSSARLTRLGSGGADSRPQTPDGQARVGRNATGRRTL
EALRISRQAVMDVNTEPSQIEQIVWDDPTAREERAKLADNMQWPGSPSQHSDPLAVPQAA
PPSHLEHAGNPLRDSMTDSELVEMAACDVIDQQMGQRLMTPPVEEPEPDLLTPKAPSIAF
PLANPPVPPGPQMEEEEEKSEAEKEPPRFQLSSLNPQERIDYSALIEELGGVVLDKQCFD
PSCSHIIVGNPLRNEKYLAAMAAGKWILHRSYLEACRSVGHFLQEDEYEWGSSSILDALP
SVTSQQKRLALAAMRWRKKLHDRADQDGAFSGWTVMLNIDQSRESGFRRLLQSGGAKVLP
SPSPSFYKGTTHLFAEFSRLKPGDFRVDVPEAMSQGVKCLKPEFIADYLMQEPSPPVELY
YLPEAAQCLPEGSVDSRATPTRKRKASGDSSKLKKTRLK
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaggagacagagaagactttgttgtaaagtttgtagaagtcaatggacgcaag
acagaccttgatgtcaaggcctacgaggccatcttggctcttcagtcggagaaatacttg
aagaccattgacgaagagactgcattacagctggaccataatgacaagtctttgttcgtc
ttcagtagcttctctactcccgcattccagcactgcaaagagctgggctgtcgaatggtg
agtcccctggtggtgctcttctgtctccagcagcagcgctgtgttcccaaagcagagctg
cctgtctacaacatggccatggctgatgtcaccatttcctgcaccagcctggacaaagag
gctcgaactgatgtgatggacttggtgcagctgatgggaggccgggtctatcgagacctc
aacgtgtctgtgactcacctggtcgccggtgaggtgggcagtaagaagtacctggtggcc
gctagcctggggaagcccattgtgctgcctagctgggtcaaaacctgctgggagaaatca
caggacagtttattccgacacaccgacctgcccatagaggattatttgtgccctgtgctc
cgtggctgcacaatctgtgtcacaggcctctcctcgatggaacgcaaggaggtgcagagg
ctctgccagcagcatggagccagctacaccggacaactcaagatgaatgagtgcacccat
ctcattgtcagcgagcccacaggtcagaaatacgagtgtgcacggaagtggaacatcttc
tgtgtgtctttacactggctgtttgacagcatcgagaagggcttctgccaagatgaaagc
cggtacactgtggagagaggtgttcagaaggccaccaagccccacacctccacccccacc
ggcaccagctcaaagagagaggaaggtgcgtctttactggggttgagccacatctctgtg
aacaatagcagaactgtgaatgacactgccatgaccaacgctacagagagccgcctggac
acgccagatcccatcgatgcgctggacatcaccgtctgcacctcagatgacttactggac
ggatgcaagttgtttctgtgtggcctgccaggaaagaagttggagaagctccgtcgtctg
gtcaacatggcagggggcctgcggtttaaccaggctagcgaggagctcactcacgtggtt
atgggagagatcgatcaggacatcaaaaccttcctggccaaagccacacacaggccttat
gtggtgacagtgcagtggctgttggacagcttctccagaggcagccgactccctgagggg
gactaccaccacccggcctgtctgcctcctgtcccggaagcagtggccatgcctgctcct
cgcgcctctgcctcccgcgcctccgcctcagaagcccccgctgcctctgagccagctacc
ccccagcaccggaaggcagaggaggacatgctgtctcagtacatggacgaggaccccacc
gtggtggagatgcctcaaccggctgacagttctgcagcaacggaggaacagtcctgggtc
tctgccccagacccgcctagcgccgcgtcacgggccagtgccgactccaccatgcaggag
cccagccaggcgggcctgtttgtggggaaacgcttcctcctggtgggctttggggccgag
gcggaggcccagctttccatgctggtgacggagaactgcgggaaggtcctggtgaggcgc
tcccgagccgtggccgactatgccgtggtgccactgctgggttgtgaggtggaggccact
gtggatgaggtggtgacagacacctggctggcaatgtgtgtggagcagcagtgtgtgttg
gagctggcctcccaccccctgttcagccccgtgcccgttatggagggccattcccccctc
agtgactgtgtcctctcagtcagtcagttcactggggccgagagggagtccctggtagag
ttggctaaacacctaggagccagtgtccaggactactttgtgcgtgcggccaacaagagg
aagggcatgctggccagtactcacctagttctgcggagccccgagggcaccaagtaccag
gcggcccagaagtgggggctgccctccgtcaccctgcgctgggtgctggagtctgccagg
acaggcctgagggcggaagagaggcacttcctggtggatttgccaccctctccagagaga
gaggaggagagttttgtggggggctcacagaagccatctatgccccctcccttgtccatg
aacaaatctccagaaatccccctgctgggcccccagagcggagctggggtcactcccctt
gacgtgggacgttttcaaagtaaggtgtttcgctctgtgctggagcaaggaggatgtgag
gaagattctaccacccctggactccaagaggggggcagaaaagcagggggtgcaaaagac
tcccccgccctgcagttggacaccccctctcgctttctctgtcgagaccagcttttcaga
cccaattttaatgtcaaggatgcgctagcagcgttggacacacctgggggcaggactgag
cagggtccggtcgtgaccccgctgtcagaggtaattgggaggaacctcaaggtggccctg
gccaacagcacccgaggtaacgcccctgacctccaggccctcagcgctagcccccagctc
agaaaggacgcccacaaaaaggcggaggaggctgctccgctggctggcgtggtgatctgt
gtcagcaagaagctgagcaagcaacagggggagctcaacgccgtagccgcttcactggga
gcagacttcaggtggtcatgcgatgacactgtgacccactatatctaccagggccgtgcc
ggggacaacactcgggagtaccggggtgtgaaggagagacgggtgcacgtggtgtcccag
cactggctacaggcatgtgctgaggaacagacgcacgtctccgaatcgctctacccgttc
acctacaaccccaagatgagcttgaacctcagccgggtgcctcctgatagtagccagagg
tgtgcccctgccacccgcacctccctaccccggttcccccttcaaagccaagaggaaaac
accagacagcctgaagacactgtggaagatgccaccatgtctcatcctgtcaatgaaaga
gagacagatcgggagccgagccaggacaatgcagagaagagagacctgtgtgaaaccctg
gagatgagggagaaccttcagaggcagttgcaggagatcatgtcagccaccaagattaca
acgggcaggcggtcctcggcccgcctcacccggctgggctctggaggggccgactcccgt
ccgcagacacccgacggccaggcccgtgtgggccgcaatgcaactggccggcgcaccctg
gaggcactgagaatatctcgccaggcagtaatggatgtgaacacagagccgtcacagatt
gagcagatcgtctgggacgaccccacggcacgcgaggaaagggccaagctggctgacaac
atgcagtggcctggcagcccctcccaacattcggatccccttgctgtaccccaagcagca
cccccttctcacttggaacacgccgggaaccccctcagggactccatgaccgactcagag
ctggtggaaatggcggcctgtgatgttattgaccagcagatgggccagaggctgatgacc
ccgccggtggaggagccggagccagacctcctcacgcctaaagcccccagcatcgccttc
cccctcgccaaccctcctgttcccccagggccacagatggaggaggaggaggagaagagt
gaggcagagaaggagcctcctagattccagctatcctcccttaacccccaggagaggata
gactacagtgcccttatagaggagctcggtggtgtggtgctggacaagcagtgctttgac
cccagctgctcccacatcatcgtggggaacccgctgaggaatgagaagtacctggcagcc
atggcagccgggaagtggatcctgcaccgctcctacttggaggcctgtcgctcagtgggt
cacttcctccaggaggatgagtacgagtggggcagcagctccatccttgatgccctacct
tccgttacctcgcaacaaaagaggctggccttggctgccatgcgctggaggaagaaactg
catgaccgcgcggaccaggatggtgcgttcagcggttggaccgtcatgctgaacattgac
cagagcagagagtcggggttcaggcgactactgcagtctggtggggcaaaggtgctcccc
agtccctctccgtctttctacaagggaaccacccacttgtttgcggagttcagtcggttg
aagccaggagacttccgggtggatgtgccagaggccatgtcccagggggtcaaatgcctt
aagccggaattcatcgcagactacctcatgcaggagccttcaccacctgtagaattgtat
tatctgccagaagctgcccagtgtctgccagagggctcagtggacagccgtgccacccca
acccgcaagcggaaagcatcaggagattcctctaagctgaagaagacccgtctgaagtga
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integrated database retrieval system
