Esox lucius (northern pike): 105027855
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Entry
105027855 CDS
T04894
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
els
Esox lucius (northern pike)
Pathway
els03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105027855 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105027855 (skiv2l)
Enzymes [BR:
els01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105027855 (skiv2l)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105027855 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
105027855 (skiv2l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
DUF2695
Motif
Other DBs
NCBI-GeneID:
105027855
NCBI-ProteinID:
XP_010898478
LinkDB
All DBs
Position
LG10:24327671..24355853
Genome browser
AA seq
1249 aa
AA seq
DB search
MERIDLPPVGPSDLPLSLLEMGCSGRFELITHPQPNDQPLPQQSTLPHGLPPTSVSLETE
VENQFLHDPAWLPIHDPDAAFHRFLKLAERDVNVESLLHCALSPLHSGISVIRDPTTGML
LDFTEVLLEDTGISAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMEELTLEQIKEKSD
LEEDIDFENGLLTVPPGLKVGMDFSDKDAKTTKREVNLMSLLSTFDDIIDCRAEIEEEKG
QGGGDAPKLPRTNSLEDLGIKDSPSTPATTSADKKDGKTSKPVEGQEEKKRWAIPVDITS
PCDDFYKRIPNPAFKYPFELDVFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQK
HMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNGS
EVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNSVEFSEWIGRIK
KKHIYVISTVKRPVPLEHYLYTGNSTKTQKEMFLLLDAAGNLQTKGYYAAIDAKKERTSK
HAQSFGTKNASQNTTPNQDRAVWLSLLHFLSQRQLTPVVAFTFSRTRCDDNARSLATMDL
TSSTEKSEIHSFFQKSLSRLRGGDRQLPQIVLMRDLLKRGIGVHHSGILPILKEVIEMLF
SRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDA
TGTVIILCKSGVHNMGDLHVMMLGKPTLLQSQFRLTYTMILNLLRVEALQVTDMMRRSFS
ESHRDTQAHEKQISRLKQTLSSLPPLDTEGQLSDLLPYYYIVTELRITTEALQCAVLGSV
NGLKALSVGRVVVVNNKQHFNALGVILQVSNDSVNRTFTTLIICEKNNEEGGGDGPNASA
FPHLYNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPERIIDNYNKRQQPRFRLDPP
GQAISTATQELLRLAEANPDGVASLDPVNDLQLKSVDVVEGTMRVRALKDTLKDFSCSHS
PTFSEQFLRVQERMKVQEELDQLLYLTSDQSLSLLPEYNQRIKVLEELKYVDKSRAVQLK
GRVACQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHITNTLQEGIER
VLAVAQRIGELQRECGIAQTAEEFVSQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVV
RCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaatagatctgccccctgtgggcccctcagacctccctttgtccctgctggag
atgggttgctcaggcagatttgagctcatcacgcatccacagcccaatgaccagcccctg
ccccaacaaagcacgcttccccatggactccctcccaccagcgtgagcctggagactgag
gtagagaaccaatttctacacgatccggcctggctccccatacacgaccccgacgctgcc
ttccacaggtttctcaagctggcagagagagatgttaatgtggagtcacttctccattgt
gctctgtctcctctgcactctggcatttccgtaatcagagacccaaccacaggaatgctc
ttggacttcactgaggtgttgcttgaggacacaggcatctctgctaagaattctatgtct
ctgcaacgcccacctaaccctaacccctctgagagcctcagaggaagcaacaccaactac
ccctttttgcctggaggcatggaggagctgacactagagcaaatcaaagagaaatcagat
ctggaggaggacatagactttgagaatgggttacttacagtgccacctggtcttaaagtt
gggatggacttcagtgacaaagatgccaaaaccacaaaaagagaagtcaacctcatgtcc
ctcctgtccacctttgatgacattattgactgccgggctgagatagaggaggagaaaggc
cagggaggtggagatgctcccaaactacccaggactaacagcctagaagaccttggcatc
aaggattccccctctacgcctgcaaccacttcagcagataaaaaagatggtaagacgtcc
aaaccagtagagggccaggaggaaaaaaagagatgggctattccagtagacatcacctcc
ccctgtgatgacttctacaagcgcatccccaacccagcctttaagtatccctttgagctg
gacgtcttccagaagcaggcggtgttgaggctggaggcccacgagtcggtgtttgtggcg
gctcacacttcagccggcaaaactgtggtggccgaatatgccattgcactttcacagaaa
cacatgacacggaccatttacacatccccgatcaaagcgctgtccaatcagaagttccgt
gacttcaagaccacctttggggatgtggggctgcttactggggacgttcagctgagtcct
gaagcctcctgtctcatcatgaccactgagatattgaggtccatgctctataacggttca
gaggtcatacgtgatttagagtgggtgatctttgacgaagttcactacatcaatgacgct
gagagaggagtggtgtgggaggaggttctcatcatgttgcctgatcacgtcagcattatt
ctgctgagtgccactgttcccaattccgtggagttcagcgagtggatcgggcgcatcaag
aagaagcacatctatgtgatcagcacggtgaagaggcctgtccctctggaacactatctg
tacacgggaaacagcaccaagactcagaaagagatgtttctattgctggacgctgccggc
aacttacaaaccaaagggtattatgctgcaatagatgccaaaaaggaacgtaccagtaag
cacgcccagtcctttgggacaaaaaatgcatcgcagaacactacaccaaaccaggaccgg
gcagtgtggctttcgctcctccacttcctgtcccagcgccagctgacccctgtggtggca
ttcactttctccaggacgcgctgtgatgacaatgctcgttcattggccaccatggacctg
accagctcgaccgagaagagcgagatccactccttcttccagaaaagcctgagccggctc
aggggaggggaccgccagttgccccagatcgtgttgatgagggacctgctgaagaggggg
atcggcgtacatcacagcggcatcctgccaatcctgaaggaggtcattgagatgctgttc
tcccgggggctagtaaaggttctgtttgccactgagacatttgcaatgggagtgaacatg
ccagccaggacagtagtgtttgacagcattcggaaacacgatggcactggctttagaaac
ctgctgcccggtgaatacatccaaatggctggtagagcggggaggagaggtctagacgcc
acaggcaccgtcatcatcctctgcaagtccggtgtgcataacatgggggaccttcacgtc
atgatgctggggaaacccacactgctacagtcccagttcaggctgacctacaccatgatc
ctcaacctgctgcgtgtggaggccctccaagtcaccgacatgatgaggaggagcttctca
gagagccacagggacacacaggctcatgagaagcagataagtcgtctgaaacagactctg
tcttccctccctcccctggacactgagggtcagctgtctgatctgctgccatactactac
atcgtcacggagctccgcatcaccacagaggccctgcagtgtgcagtgctggggtcagtg
aatggcttgaaagctctgtctgtgggacgagtggtggtggtcaacaacaaacagcacttc
aacgcccttggagtcatcttgcaggtgtcgaatgattcagtaaatcgtacttttacaact
ctaataatctgtgagaagaacaacgaggaaggaggaggagatggccccaacgccagtgct
ttccctcacctctacaacactgccctcttcatacccgagggtccctgcagtcacacagtc
cagaagctaaagctacaggacatatctgccatcacagtcaagacgctgaaggtcatccca
gaacgaatcatcgacaactacaacaagaggcagcagccacgctttaggcttgatccacca
ggccaagccatctccacggcgacacaggagcttctgcgattagcggaggccaacccggac
ggggttgcaagcctcgacccggtgaacgacctccagctgaagagcgtagacgtggtggag
ggcaccatgagggtgcgcgcgttgaaggacaccctcaaagacttcagctgcagccactca
ccaaccttctcagaacagtttttacgggtgcaggagaggatgaaggttcaggaggaattg
gaccaactgctctacctcacctcggaccagtccctgtctttgctaccagagtacaatcag
agaatcaaggtgcttgaggaactgaagtatgtggacaagagccgcgcggtgcagctgaaa
ggtcgcgtggcctgccagatcagtagccatgagctgctcctcactgagctgctgttcgag
aacgcactgagtcccctggccccggaggaaagcgctgcgctgctgtcctgtctggtcttt
caacagaagacccaggtggagccccacattaccaacaccctgcaggagggcatcgagaga
gtgctagcggtggctcagcgtattggcgagctccagagggaatgtgggatagcacagacg
gctgaggagtttgtgagccaattcaagtttggtctcaccgaggtggtctactgctgggcc
agaggcatgccatttgcggagatcgcccagctgacagacgtccaggaggggaccgtggtg
cgttgcatccagaggctggacgaggtgctgaaggaggtacgccaggcggcccgcatcgtg
ggcgactctgtcctgggcagcaagatggagaaggcctccctggccatccgcagggacatc
gtgttcaccgcctcgctgtacacacattga
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integrated database retrieval system
