Esox lucius (northern pike): 105028510
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Entry
105028510 CDS
T04894
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
els
Esox lucius (northern pike)
Pathway
els03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105028510 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105028510 (ddx6)
03036 Chromosome and associated proteins [BR:
els03036
]
105028510 (ddx6)
Enzymes [BR:
els01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105028510 (ddx6)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105028510 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
105028510 (ddx6)
Chromosome and associated proteins [BR:
els03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105028510 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
105028510
NCBI-ProteinID:
XP_010899583
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All DBs
Position
LG01:complement(3786773..3799249)
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AA seq
493 aa
AA seq
DB search
MSTASTQNPVILGLSKQNGQHRGQVGKPAGSPGGGGGGPQAQKPSQMKQAPSTINNGTGR
GSAQLAKAAPPASTVIKPGDDWKKNLTLPPKDMRMRTSDVTATKGNEFEDYCLKRELLMG
IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQAVGI
VPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLI
KKGVAKVNHVQMIVLDEADKLLSQDFVVMMEEILSYLPKQRQILLYSATFPLSVQKFMNS
HLSKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELL
AKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFD
FPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGSIDKSLYV
AEYHSESGEEGKP
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgccagtacccagaacccagtgatactgggcctgtccaagcagaatggccag
cacagaggccaggtggggaagcctgcaggcagtccaggaggtggaggagggggtcctcag
gcacagaagcccagtcagatgaagcaggccccaagcacaatcaacaacggaactgggcgt
ggcagtgcccagctggccaaagctgccccgccagccagcacggtcatcaagcctggagat
gactggaagaagaatttgacactcccgccaaaagacatgaggatgagaacttcggatgta
actgcaactaaaggcaacgagtttgaagactactgcctcaagagagagcttctgatgggg
atctttgagatgggctgggagaaaccgtctccaatccaggaggagagcattcccatagcg
ttatccgggagggacatactggccagggcaaagaatgggacagggaagagcggagcctac
ctcatccccctactggaacgcatcgacctgaagaaggactgcatacaagctgtgggcatc
gtccccaccagagagctggccttgcaggtgagccagatctgtatccaggtcagcaaacac
atgggaggagtcaaagtcatggcaaccaccggaggcaccaacctccgtgatgacatcatg
aggctggacgagacagtgcatgtggtgatcgccacgcctgggaggatcctggatctgatt
aaaaagggcgtggccaaagttaatcacgttcagatgattgtcttggatgaggccgacaag
ctactgtctcaggactttgtggtgatgatggaagagattttgagctatctgcccaaacag
agacaaattctgctttactcagccaccttccctctgagcgtgcagaagttcatgaactcc
cacctgtcgaagccatatgagatcaacctgatggaagagctgaccctgaagggggtcacc
cagtattatgcgtacgttacggagaggcagaaggttcactgtctcaacacgcttttctct
cggctccagatcaaccagtccataatcttctgtaactcgtctcagagggtggagctgctt
gctaagaagatctcccagctgggctactcgtgtttctatatccacgccaagatgagacag
gaacatcgtaacagagtgtttcacgacttcagaaacggactctgccgtaacctggtctgc
actgacctcttcacgcgaggtatcgacatccaggcggtgaatgtggtgatcaactttgac
tttcccaagctgggagagacctacctgcaccgcatcggcaggtctggtcgttttggccac
ctgggcctggccatcaacctgatcacgtatgacgaccgcttcaacctgaagggcatcgag
gagcagctgggcacagagatcaaacccatcccaggcagcatcgacaagagcctgtatgtt
gcggagtaccacagcgagagtggtgaggaggggaagccgtga
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